Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04446 atgtctgtcatcgaaacccccgccgtccaccacctaagcgggggcgccaccgatcaccaccgtcacccgtcgaagaggaaattcgacgatgaagaggaggaggaattgtcggacttggtgtgcgtgaggatgcggaaggaggaggtgagggcggtgaattcgtggtcgtcgcagcgatcgcacatccagttcttcgttcgaatgatgtctggtggaaacacgattgtgatgcaggcgttcccggaagacagcgtgaaatcgatccacgagcgtatccaaaccatgaagggaatccctgtgttcgaacagagacttatctacagagggaagcagcttcagtgggaacagactctggctgagtgttccattcaaaacgacgccaaccttcaattagttggtcttttgcggagtaccgaacacccgcaagcctggcaagtgatcaatgacatggtttctcttgtttaccgtctttgccgtggcgaaaccgttcacgattccttgaagaccataaagggtttgatcaccaattacttgaacatgactcccagaattgataacgactctgcctctggctactttcagattttcatgtcttcctctgcccctgccgtccttgttatgctctatgtctctccttacgcaggtaataaggactgtgctgattcttctgttaggcactttttgagttcctgtcgcaatactttgtctaaggcattgcacgggcagtgtgctgttgtggtgttggagttttgtaagttgcttaggcgagtgggctgtcatcagactcatgaccctttgtatctctattgtcgaagtacttttggctccttgttggaaactgctgccgtttcctatgctgcttctgataatgttaagggcttggttttgattcaggatattttcccctttgttcgtgagcttgcttatagcttgttgcgaaacttggacttgagtatggattccccctctgccgccggccctttatccaatgatgttggtgattttactgctttcttaatccccgtccgtactggaattaaggagcaacaagctatcaaggattctatctctcaagacaaacgccataaagatttcttgcttgctgaagagattgaatatctccatcaattgtacattaagttattgaacaaaattgatcagtgccttcagagaatggaccagagcttggatggtcacgaaatagtcgaaggggatagtctttatcctgcttggtcttattatctttctatcttgaaggagttgtatcaaatttctaagctttatgatggtgccgaagaaaagctttggagcgttttgaagcggcaaagaagtgtggtatgtttgctgatcgttcgctatgccaagagaactgacgagcatcagtggattctggaatataggtgtgtcactaattttgagtctagaaggcatttggccatgatgatgttcccggaggtcaaagaagattatgaggagttgcacgagatgcttattgacaggtctcagttattgaccgagtcttttgagtacatagctcgtgctgagcctgagtctctccatgctggcctgtttatggaattcaaaaatgaggaagctactggcccaggtgtacttagggagtggtttcttctggtatgtcaagcaatatttaatccacaaaatgcccttttcgtcgcatgcccaaatgatcgaaggagatttttccccaatcctgcatctaaggtacatcctctgcaccttgagtacttcagctttgctggtcgagttattgcattagctttgatgcatagagtgcaagtgggtattgtttttgatcgtgtgtttttcctgcaattggcgagaaactatattgctttagaagatataagggatgcagatccttgtctgtatactagctgcaagcaaatattggatatggatgctgatttcattgattcagatgcattaggactgacatttgttagagaggtggaggaattaggacagaggaaagtagttgagctctgccctggggggaaaaaccttgtagttaatagtaagaacagggacaagtatgttgatcttcttatacaggatcgctttgtaacatccatatctgagcaggtatcacattttgccaaaggttttgctgatattctgtcaaactcaaagctccagcactacttcttccaaagtttagaccttgaagatcttgattggatgctgcatgggagtgaagataccatttctgttgaagattggaaagcgcataccgagtataatggctataaagagacagatattcagatatcttggttttgggaggtatgtgcctaa 2316 0.0 MSVIETPAVHHLSGGATDHHRHPSKRKFDDEEEEELSDLVCVRMRKEEVRAVNSWSSQRSHIQFFVRMMSGGNTIVMQAFPEDSVKSIHERIQTMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGLLRSTEHPQAWQVINDMVSLVYRLCRGETVHDSLKTIKGLITNYLNMTPRIDNDSASGYFQIFMSSSAPAVLVMLYVSPYAGNKDCADSSVRHFLSSCRNTLSKALHGQCAVVVLEFCKLLRRVGCHQTHDPLYLYCRSTFGSLLETAAVSYAASDNVKGLVLIQDIFPFVRELAYSLLRNLDLSMDSPSAAGPLSNDVGDFTAFLIPVRTGIKEQQAIKDSISQDKRHKDFLLAEEIEYLHQLYIKLLNKIDQCLQRMDQSLDGHEIVEGDSLYPAWSYYLSILKELYQISKLYDGAEEKLWSVLKRQRSVVCLLIVRYAKRTDEHQWILEYRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLARNYIALEDIRDADPCLYTSCKQILDMDADFIDSDALGLTFVREVEELGQRKVVELCPGGKNLVVNSKNRDKYVDLLIQDRFVTSISEQVSHFAKGFADILSNSKLQHYFFQSLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDIQISWFWEVCA 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04446 771 MobiDBLite consensus disorder prediction 14 31 - -
Pste6g04446 771 PRINTS Ubiquitin signature 94 114 IPR019956 -
Pste6g04446 771 PRINTS Ubiquitin signature 73 93 IPR019956 -
Pste6g04446 771 PRINTS Ubiquitin signature 115 136 IPR019956 -
Pste6g04446 771 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 615 697 - -
Pste6g04446 771 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 55 150 - -
Pste6g04446 771 Pfam Ubiquitin family 65 133 IPR000626 GO:0005515
Pste6g04446 771 SMART hect_3 513 771 IPR000569 GO:0004842
Pste6g04446 771 SMART ubq_7 62 134 IPR000626 GO:0005515
Pste6g04446 771 Gene3D Hect, E3 ligase catalytic domain 615 697 - -
Pste6g04446 771 ProSiteProfiles Ubiquitin domain profile. 62 138 IPR000626 GO:0005515
Pste6g04446 771 MobiDBLite consensus disorder prediction 1 31 - -
Pste6g04446 771 Gene3D - 55 154 - -
Pste6g04446 771 SUPERFAMILY Hect, E3 ligase catalytic domain 490 770 IPR035983 GO:0004842
Pste6g04446 771 Gene3D Hect, E3 ligase catalytic domain 738 771 - -
Pste6g04446 771 Gene3D Hect, E3 ligase catalytic domains 495 720 - -
Pste6g04446 771 SUPERFAMILY Ubiquitin-like 62 150 IPR029071 -
Pste6g04446 771 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 62 769 - -
Pste6g04446 771 ProSiteProfiles HECT domain profile. 515 771 IPR000569 GO:0004842
Pste6g04446 771 Pfam HECT-domain (ubiquitin-transferase) 544 769 IPR000569 GO:0004842
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04446 62 136 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 4.73e-11 59.3