Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04421 atggggaaatctggggctagaagaaagaagggtggttcgaacgcaaaccaaggtgttagtgttgataattcaggttcaggtgcggtagcagccccagcagctaacagtggggtggagttgttggattcgtcgatatttttgaagagggcgaatgagctgaaagaagaagggaataagaggtttcagaataaggactatgcgggtgctcttgaacagtacgagagtgctcttcgtttaacccccaaaatgcaccctgacagagccgtttttcacagcaacagggccgcgtgtttgatgcagatgaagcccattgattatgaggctgtcattgctgagtgcaccatggctcttcaggtccagcctcgctttgttcgggcccttcttcgccgggcccgcgcattcgaggccgttgctaagtatgaaatggctgttcaagatgtgcagttcttattggcggctgatcctagtaaccgtgacgctttggagattgctcagagattgaggactgcgttgggcccgcgccaggaagcccagcaggacctccacagccgcccctccccggctgcccttggtgcttccgctgttcgtggtgcccctattgctggattagggccgtgtttgcctgcccggcctgtgtcaaagaagggacccaattcagcggttggatctgtacttttgcctaataataacaagctagacaagtcgcagactgttttacctactgaaaatggtcctgacaccaagccccagtcgccaaaattggtgttgaagccttcaaatggttctgcaaagcttcctaaccctacaaaggaagaccacaaagaactgtcctcaaccatccatgggcagcgttctgaagttgcaattcgtttgagacagttgaagcttgtttatgatcatgacattaggcttgcccagatgcccgtcaactgcagttttagagtactaagggatgtagtaagtaaaagatttccttcgtcaagttctgttctgattaagtataaggattgcgatggtgatttggtcactattacctctacggatgaactcagactagcagagtctagtgttgatagccatctcctgaaagaacctggggaacataaaagtgattccgtttcaatgctgagactgcatattgttgaagttagtccagagcaggagccacctttattggaagaagaagaagaagaagaagaagaagaagaagaaaaaccagttgagaatgaagggatcaagggagaagagagtggatctcattcttcccttgccgaatctgtatctgaagttcctgatactgagcttttccgctcacatgttggtattgatcctgatgctcatattgacgtgcatgagcttggaatggagctttgttctgaggcactagaggaaacagtaactagtgaggaggctcaggatttatttgacaaggctgcttcaaagtttcaggaggttgccgctttggctttcttcaactggggtaatgttcatatgtgtgcagctaggaagcggatccccctggacgaatcagctgggaaagatgtagtagcagagcagcttcaagtggcctatgaatgggtcaaggaaaagtattctttggcaagagagaggtacgaggaagcattatcgatcaaaccagacttttatgaggggcttttggctttggggcagcagcaatttgaaatggctaaacttcattggtcttatgctcttgctaagaagattgatctattgggctgggattctaaggagacacttcaactttttgacagtgcagaggagaagatgaaagctgcaacagatatgtgggagaaactggaggaacagagagcaaaagagctaaaggaccctaatgcaacgaagaaagaagagctgtttagaagaagaaagaaacaaggtggaactactgaaggtgagtcctccagtgttggaggtctgggtgatatatcagcagaagaagctgctgagcaagcagctgtcatgagatcacaaattcacctcttttggggtaatatgctttttgaaagatcccaagttgaatgcaaattgggaatgagtggatggaaggaaaacctagatgctgcaactgaacggttcaagcttgcaggagcttctgaagcagacatttcgatggttctaaagaatcattgctcaaatggagatgcaaaagatggggatgataaaaaggttgagaacccacagcacaataagactgttaaaccagagatgaataaggctaataaagtgtga 2250 0.0 MGKSGARRKKGGSNANQGVSVDNSGSGAVAAPAANSGVELLDSSIFLKRANELKEEGNKRFQNKDYAGALEQYESALRLTPKMHPDRAVFHSNRAACLMQMKPIDYEAVIAECTMALQVQPRFVRALLRRARAFEAVAKYEMAVQDVQFLLAADPSNRDALEIAQRLRTALGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPVSKKGPNSAVGSVLLPNNNKLDKSQTVLPTENGPDTKPQSPKLVLKPSNGSAKLPNPTKEDHKELSSTIHGQRSEVAIRLRQLKLVYDHDIRLAQMPVNCSFRVLRDVVSKRFPSSSSVLIKYKDCDGDLVTITSTDELRLAESSVDSHLLKEPGEHKSDSVSMLRLHIVEVSPEQEPPLLEEEEEEEEEEEEKPVENEGIKGEESGSHSSLAESVSEVPDTELFRSHVGIDPDAHIDVHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKDVVAEQLQVAYEWVKEKYSLARERYEEALSIKPDFYEGLLALGQQQFEMAKLHWSYALAKKIDLLGWDSKETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKEELFRRRKKQGGTTEGESSSVGGLGDISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMSGWKENLDAATERFKLAGASEADISMVLKNHCSNGDAKDGDDKKVENPQHNKTVKPEMNKANKV 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04421 749 SMART PB1_new 291 383 IPR000270 GO:0005515
Pste6g04421 749 Gene3D Tetratricopeptide repeat domain 436 633 IPR011990 GO:0005515
Pste6g04421 749 MobiDBLite consensus disorder prediction 609 648 - -
Pste6g04421 749 Pfam PB1 domain 292 382 IPR000270 GO:0005515
Pste6g04421 749 MobiDBLite consensus disorder prediction 719 749 - -
Pste6g04421 749 Gene3D Tetratricopeptide repeat domain 47 178 IPR011990 GO:0005515
Pste6g04421 749 MobiDBLite consensus disorder prediction 384 430 - -
Pste6g04421 749 MobiDBLite consensus disorder prediction 10 24 - -
Pste6g04421 749 SUPERFAMILY CAD & PB1 domains 290 358 - -
Pste6g04421 749 Coils Coil 589 609 - -
Pste6g04421 749 MobiDBLite consensus disorder prediction 718 749 - -
Pste6g04421 749 MobiDBLite consensus disorder prediction 222 266 - -
Pste6g04421 749 SMART tpr_5 124 157 IPR019734 GO:0005515
Pste6g04421 749 SMART tpr_5 88 123 IPR019734 GO:0005515
Pste6g04421 749 SMART tpr_5 50 83 IPR019734 GO:0005515
Pste6g04421 749 SMART tpr_5 515 548 IPR019734 GO:0005515
Pste6g04421 749 MobiDBLite consensus disorder prediction 1 26 - -
Pste6g04421 749 Gene3D - 292 363 - -
Pste6g04421 749 SUPERFAMILY TPR-like 469 564 IPR011990 GO:0005515
Pste6g04421 749 PANTHER PROTEIN CLMP1 1 740 IPR044517 -
Pste6g04421 749 MobiDBLite consensus disorder prediction 388 406 - -
Pste6g04421 749 MobiDBLite consensus disorder prediction 609 635 - -
Pste6g04421 749 SUPERFAMILY TPR-like 47 181 IPR011990 GO:0005515
Pste6g04421 749 ProSiteProfiles TPR repeat profile. 50 83 IPR019734 GO:0005515
Pste6g04421 749 ProSiteProfiles PB1 domain profile. 284 383 IPR000270 GO:0005515
Pste6g04421 749 CDD PB1 293 363 - -
Pste6g04421 749 MobiDBLite consensus disorder prediction 207 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04421 Pste-Chr6 33503015 33505744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04421 47 171 Calmodulin-binding Proteins AT3G25230 28.676 5.84e-10 60.5