Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04419 atggacggagcccaaccgcggagacggacgctcaaagaacgcctcagattcaccgcaatgggctgctgcggggccacctgggttttccgtcctaccctcagggcccatgaagaaacgaatgccggtcaagatccgcggccgtcggggtcgggtatgaatctggcggcggcactggcggcggagcgacagttcagggagggggagggggagacgccgtcgagggtgtcgttgatgcggctgttggaggagacggaggcaggagggggttcggtggggaatgattcggtgtgctgcgtgtgcatgggtaggaagaaaggcgcggcattcatcccgtgcggtcacactttctgtaggctctgttcaaaggagctgttgttgaacagaggtcgggcgagaggacacgaggcagacaaagggagggaggaaaagagggctcaccaaaacgatgattacaggttgagacccagaatcactatggggagataa 486 0.0 MDGAQPRRRTLKERLRFTAMGCCGATWVFRPTLRAHEETNAGQDPRPSGSGMNLAAALAAERQFREGEGETPSRVSLMRLLEETEAGGGSVGNDSVCCVCMGRKKGAAFIPCGHTFCRLCSKELLLNRGRARGHEADKGREEKRAHQNDDYRLRPRITMGR 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04419 161 SUPERFAMILY RING/U-box 92 131 - -
Pste6g04419 161 MobiDBLite consensus disorder prediction 131 161 - -
Pste6g04419 161 Pfam Zinc finger, C3HC4 type (RING finger) 94 125 - -
Pste6g04419 161 CDD RING-HC 97 128 - -
Pste6g04419 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 138 IPR013083 -
Pste6g04419 161 PANTHER OS01G0917900 PROTEIN 49 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04419 Pste-Chr6 33486132 33491420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04419 7 129 C3H Transcription Factor Family AT4G22250 53.750 7.32e-42 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04419 6 33486132 33491420 Pste2g02613 2 26337856 26338425 PCT