Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04404 atggaggttggttctaacgaggcttctagtgtgatgggttttggagagaatacatgtagtagtggggtttgtccaatgatgatgatgcctttagtgacttctcatcatggtggtcatcatccattaaactctaattttaataatcccaatcctaatgaacacacaaacacaaacactctcttccttcccatgccttgtactaataatcaccacccaaaccgcaataaccacaactccaacgtcactgagttagggtatttgatggagatccacaacaacaacgatggaagctcctcgtctacttccgcggtgaaggccaagatcatggcccatcctcactatcaccgtctcttggctgcctacgtcaattgtcaaaaggtaggggctccacctgaagtggtggcaagattagaagaagcatgtgcatctgctgcagtgacaatggcaggcggaactgctagcatcggcgaggatccggcgctggatcagttcatggaggcatactgtgagatgttgatcaagtacgagcaggagctttgcaaacccttcaaggaagccatgctcttccttcaaaggatcgagtgccagttcaaatctctcactatttcttattctgacactgcttgtaatgaagctattggtagaaatggatcatctgaagatgttgatgtacacaacagcataatagatccacaggcagaggaccaagaactgaaaggtcaactcttacgcaagtaccgtggataccttggtagtttgaagcaggaattcaccaagaaaaggaaaaagggcaagcttcccaaagaagcaaggcaacaattacttgaatggtggagcagacactataaatggccttacccatctgaatcacagaagctggctcttgctgagtcaacaggcctagatcagaagcaaattaacaactggtttattaatcaaaggaaacggcactggaagccttcagaggacatgcaatttgtggtggtggatccaagccatccacactactacatggaaaatgttatgggcaatccctttcccatggatctctcccacacaatgctctaa 1068 0.0 MEVGSNEASSVMGFGENTCSSGVCPMMMMPLVTSHHGGHHPLNSNFNNPNPNEHTNTNTLFLPMPCTNNHHPNRNNHNSNVTELGYLMEIHNNNDGSSSSTSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTASIGEDPALDQFMEAYCEMLIKYEQELCKPFKEAMLFLQRIECQFKSLTISYSDTACNEAIGRNGSSEDVDVHNSIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVMGNPFPMDLSHTML 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04404 355 ProSitePatterns 'Homeobox' domain signature. 295 318 IPR017970 GO:0000981|GO:0006355
Pste6g04404 355 Pfam KNOX2 domain 154 201 IPR005541 GO:0003677|GO:0005634
Pste6g04404 355 ProSiteProfiles 'Homeobox' domain profile. 257 320 IPR001356 GO:0003677
Pste6g04404 355 Pfam ELK domain 237 257 IPR005539 GO:0003677
Pste6g04404 355 SMART HOX_1 259 324 IPR001356 GO:0003677
Pste6g04404 355 Pfam Homeobox KN domain 277 316 IPR008422 GO:0003677|GO:0006355
Pste6g04404 355 Gene3D - 262 324 - -
Pste6g04404 355 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 59 326 - -
Pste6g04404 355 SUPERFAMILY Homeodomain-like 259 335 IPR009057 -
Pste6g04404 355 SMART KNOX2_2 151 202 IPR005541 GO:0003677|GO:0005634
Pste6g04404 355 CDD homeodomain 269 321 IPR001356 GO:0003677
Pste6g04404 355 ProSiteProfiles ELK domain profile. 237 257 IPR005539 GO:0003677
Pste6g04404 355 SMART KNOX1_2 102 146 IPR005540 GO:0003677|GO:0005634
Pste6g04404 355 SMART ELK_2 237 258 IPR005539 GO:0003677
Pste6g04404 355 Pfam KNOX1 domain 103 142 IPR005540 GO:0003677|GO:0005634
Pste6g04404 355 FunFam Homeobox protein knotted-1-like 2 262 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04404 Pste-Chr6 33350662 33359342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04404 87 355 Homeobox Transcription Factor Family AT1G62360 74.394 4.22e-133 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pste6g04404 KNOX2 3.6e-21 No_clan