Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04398 atggaagttgcagtcccaagactacaacattcaaaaaatccgcacaatgagaataagatggagttctcaagatgctcagaagtttatggagatttcatgaaaaaagctgaagaaatccctgagtatggtaataagaaaccaaaactcaaaggggaagaaactatgagatgtttaaagaaaaataatgcagtaagggttacacagggagaccatgtaaatcagcatactaacaacaaaccgtacaaaatcttaaaatcctctaaaggttttggaactacaaagaagaggaaagttgaagaaatctataagcgtgatgctattaaactgaagttatgcaagaaaggagatgagaaagagaagcttactgtctcaaacaagataaggaaatttgaagatgatgatgatgatgatttagtagatgaagaaatgctcgttcttttaaaatcaaagagtgggagaagagccagaagaatgaataatgtgatggatgttggacaaaatccccgaaaatgccaccaatgcaagaaaaaggagagaacactttttgtgccttgtactaaatgcccaaaaatgtattgtatgcgatgtgtagataaatggtaccctgatatgtccgtagaagaaattgctgcaagttgtccattttgcctgaaaaattgcaattgcaatgtttgcttgtgctcaagaggagtgattaagacatctaaaagggatatcactggtcatgataaagctcagtatcagcaatatatgattaagttactgctaccatttttgaaacaagtttgtcacgaacaaagtcaagaggagcagattgaagctaaattactaggaaaatcttcttttgagcttgagatcccccaaagtctttgtggtgatgacgaacgtgtatattgtgaccattgtgctacttcaattattgaccttcatagaagctgccccaattgttcctatgaactctgccttagttgttgccaagaagtacgtgatggaagcattacaccccgggctgagctgaagttcccgtatgtgaataggggctataattatatgcatggtggggatcctatacctgtgtcttgtgatttagatacatcagaaggtcatattgagccatctactttgtggaatgctaagagtgatggaagcattatttgtgcaccaaaggagttggggggttgtggtagtgctgtattggagctgaggcgcattcttctttgtgggtggatatctgacttggaagctaaagctcacaatatgctgaaactttgggaaattgaacacacaactcttcagcaaaaagaaacagtatcaagctacacttctttgagacaagaagctattagaaaaggcataaatgacaacaacatatattgtccagagttaagtaatattaaaagaagaggaatgttacttttccaaaagcattgggctaatggggaaccaattatagttcgtgatgtacttaaacaggggacaggtctgagctggaagccaatggtgatgtggagagcattatgtgaaaatatggtttcagaaatcagttcaaaaatgtcagaagtgaaagctattgattgcctggctaactgtgaggtagaaattgatactcacacattctttaaaggttatacagagggaagaacatacaaaaatctgtggccagagatgctcaagctaaaagattggcctccctcagataaatttgaagatcttttgccccgccactgtgacgagtttattagcttcttgccatttcaagagtattgcaatcctcgcgctggaattctcaatcttgctgtgaagttgccagcccatgtcctaaaacctgacatgggtccaaaaacatatattgcttatgggattaaagaagagcttggtagaggagactctgttacaaagcttcactgtgatatgtcagacgcggtgaatattttgacccatacagaagaggtgacgttaacggatgagcagcactttattatttcaaagttgaaagaagcacaccaggcacaagatgagagagaactgtgtgctcgagagagggttgctgacagtctgcatggtcgaccttgcacatacaacaaagaatgtaaagaaaataaggaagtttttgaagccaaaggcttgaagaaacaacctattgaaattaatatagaggtctttccgaatgatgtgcctaaggaagtcacttcttcagtgaaggaatcattggaaactggtagtgccctatgggatatctttcggagagaggattctgacaagttagaaacatatcttagaaaacactcaaaagaatttagacatacttattgttctccagttgaacaggttgtacatccaattcatgaccaatgtttttatttgacatcggaccacaagaagaagttgaaagaggagtttggtgtagaaccatggacttttgaacagaaacttggggaggcagtatttattcctgctggatgcccacatcaagtcagaaatctcaagtcatgcacaaaagtagctgtagactttgtgtccccagaaaatatccatgagtgtctgcgtttaacaaatgagttccgtcagcttcccaagaaccacaaggctagagaagataagcttgagataaagaagatgatactttatgctgttgatcaagctgtcaatgacttgaaagatatactgaagtgttcttga 2679 0.0 MEVAVPRLQHSKNPHNENKMEFSRCSEVYGDFMKKAEEIPEYGNKKPKLKGEETMRCLKKNNAVRVTQGDHVNQHTNNKPYKILKSSKGFGTTKKRKVEEIYKRDAIKLKLCKKGDEKEKLTVSNKIRKFEDDDDDDLVDEEMLVLLKSKSGRRARRMNNVMDVGQNPRKCHQCKKKERTLFVPCTKCPKMYCMRCVDKWYPDMSVEEIAASCPFCLKNCNCNVCLCSRGVIKTSKRDITGHDKAQYQQYMIKLLLPFLKQVCHEQSQEEQIEAKLLGKSSFELEIPQSLCGDDERVYCDHCATSIIDLHRSCPNCSYELCLSCCQEVRDGSITPRAELKFPYVNRGYNYMHGGDPIPVSCDLDTSEGHIEPSTLWNAKSDGSIICAPKELGGCGSAVLELRRILLCGWISDLEAKAHNMLKLWEIEHTTLQQKETVSSYTSLRQEAIRKGINDNNIYCPELSNIKRRGMLLFQKHWANGEPIIVRDVLKQGTGLSWKPMVMWRALCENMVSEISSKMSEVKAIDCLANCEVEIDTHTFFKGYTEGRTYKNLWPEMLKLKDWPPSDKFEDLLPRHCDEFISFLPFQEYCNPRAGILNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTEEVTLTDEQHFIISKLKEAHQAQDERELCARERVADSLHGRPCTYNKECKENKEVFEAKGLKKQPIEINIEVFPNDVPKEVTSSVKESLETGSALWDIFRREDSDKLETYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTSDHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTNEFRQLPKNHKAREDKLEIKKMILYAVDQAVNDLKDILKCS 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04398 892 ProSiteProfiles Zinc finger RING-type profile. 171 216 IPR001841 -
Pste6g04398 892 Pfam JmjC domain, hydroxylase 735 838 IPR003347 -
Pste6g04398 892 ProSiteProfiles JmjC domain profile. 591 855 IPR003347 -
Pste6g04398 892 CDD cupin_RmlC-like 779 839 - -
Pste6g04398 892 SMART cupin_9 572 855 IPR003347 -
Pste6g04398 892 Gene3D Cupin 459 864 - -
Pste6g04398 892 SUPERFAMILY Clavaminate synthase-like 457 886 - -
Pste6g04398 892 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 50 888 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04398 Pste-Chr6 33258035 33264362 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pste6g04398 JmjC 2.6e-15 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04398 6 33258035 33264362 Pste6g04398 6 33258035 33264362 ECH
Pste6g04398 6 33258035 33264362 Pste2g02594 2 26094703 26098910 PCT