Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04394 atggccacgtcaacccgacccctcttgctttcatgcttcatgctacactttgtttcaacctttgttactgcccattcaaatgaaaacaattaccacaacactccccaacctttacctacctcaaagtatctccccaagagcactcctaagaaagcattgctcaatgtgatagactcttgctggcgggccaggccaaattgggcctccaatcgccaggccttggctgattgtgcaattggatttggcaaagatgctataggaggcaagtatggtgcaatataccaagtcacagatccctctgatgaccctgtagacccaaaaccaggcacccttcgttatggtgcaatccaaacagagccactttggatcatttttgacaaagacatgtttattaacctccagaatgagcttatcattaatagctacaagaccattgatggtagaggagctaaagttgagattgctgatgggccatgcatcactatacaaggtgttagtcatgtcattatacatggcattagcatccatgattgtaaaccagccaatcctggccttgtcaagagtacccctgaccatgttgggcatcgtctaggttctgatggagatgccattagcatattttattcctcatatatctggatcgatcattgttttctggctcgttccaccgatggcctaatcgatgtcattcatgcctcaactgccattaccatctctaacaactactttactcagcatgacaaagttatgttgctaggacataatgaccaaaacacggcggataaaataatgagagtaacaatagcattcaaccggtttgcaagtggcctaaccgaaagaatgccaagggtaagatttggttatgtccatgtggtcaacaacaaatatgatgagtggaaaatgtatgctattggcggcagtgctaatccgaccattttaagtgaaggaaattattatgtaggaccagatgacccaaatgcaaaacaagctaccaagagggaagggaaggaaaactggaagagttggaaatggaggtcctctaaggacgtattcctaaatggtgcttattttgtaccctcaggatttggaagctgtgctccaaattactcacctactcaatctttcactgttgctcaagcctacctagtgcctgcaataactctcaatgccggccccacaaattgtgttgttgggaaagcatgttag 1206 0.0 MATSTRPLLLSCFMLHFVSTFVTAHSNENNYHNTPQPLPTSKYLPKSTPKKALLNVIDSCWRARPNWASNRQALADCAIGFGKDAIGGKYGAIYQVTDPSDDPVDPKPGTLRYGAIQTEPLWIIFDKDMFINLQNELIINSYKTIDGRGAKVEIADGPCITIQGVSHVIIHGISIHDCKPANPGLVKSTPDHVGHRLGSDGDAISIFYSSYIWIDHCFLARSTDGLIDVIHASTAITISNNYFTQHDKVMLLGHNDQNTADKIMRVTIAFNRFASGLTERMPRVRFGYVHVVNNKYDEWKMYAIGGSANPTILSEGNYYVGPDDPNAKQATKREGKENWKSWKWRSSKDVFLNGAYFVPSGFGSCAPNYSPTQSFTVAQAYLVPAITLNAGPTNCVVGKAC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04394 401 SMART amb_all 128 325 IPR002022 -
Pste6g04394 401 SUPERFAMILY Pectin lyase-like 51 393 IPR011050 -
Pste6g04394 401 Gene3D - 54 394 IPR012334 -
Pste6g04394 401 PANTHER PECTATE LYASE 18-RELATED 35 399 IPR045032 GO:0030570
Pste6g04394 401 Pfam Pectate lyase 136 319 IPR002022 -
Pste6g04394 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Pste6g04394 401 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Pste6g04394 401 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Pste6g04394 401 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Pste6g04394 401 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Pste6g04394 401 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Pste6g04394 401 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Pste6g04394 401 PRINTS Pollen allergen Amb family signature 342 366 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04394 Pste-Chr6 33196424 33198562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04394 48 401 Polysaccharide Lyase AT1G11920 70.423 0.0 530
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04394 6 33196424 33198562 Pste6g04394 6 33196424 33198562 ECH