Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04390 atgcaccctctcaacctcaccacccctcatcccactctccctgaacttgacttcctctcccctacaaaccataaccaccaaacccctcccaactctcttccccctctaaatactggtttgcaactcctcaccgccaacgccggaagtgatcagtcaacggttgatgatggggtttcatcggatgctgaagataagcgtgccaagatcactgagctgacacaattgcaagaggaccttcgacgcgtaaatgcagagaaccaaaagctgaaggagatgctcagccatgtcaacaataactacacaaacatgcaaatgcatcttgcagcactgctgcaacaacaacagcagaacaaacgcactgagaacacagaacaaggggttgttgaaggaagaagtgaggagagaaaacatggagttggcgaaggaacgatgcctagacagttcctggatttaggtcgaagtggtaagaccgaaatagatgatcaagtatctaattcttcttgtggtgaaaggactcgatcgagcacacctcccttcaataaaaatgataaggataagaaagacccagatccagactctgacaaattgactccctccaaccctacggatccatcccctagtccggaagccactatgagaaaagctcgtgtctcagtccgcgcccgatcagaagctcccatgatcagtgatgggtgccaatggcgaaaatatggacaaaagatggctaagggaaacccttgtcctcgggcatactacagatgcactatggcaattggttgcccagttcgcaaacaagttcaacgttgtgcggaggacaggagcattttgacaacaacgtacgaaggtactcataaccatccactgccaccagcagctatggccatggcatcgaccactgcagctgctgctagcatgttgctgtctggttcaatgtccagtgttgatggaatagtgaaccccaatttgctaaccagagctattcttccttgctctaacatggcaaccctttcagcttcagccccattccccacagtgacattggacctcacacacaacccagacgcgttgcagcagtaccaaagacctcaaaccccattcccatgtcagcctgagaactatgtgtcaggatccagtcccacgcaatcacaactgccgcaactgcttgcacaagcgctctataatcattccaaattctcaggccttcaattgtctcaagatgtggggtcttataataattcacaagctccaagactgtccttgctaacaaaccaacagatctcgcttgctgatacggtcactaccatcaccgccgacccaaacttcacggcagcacttgccgccgccatctcctccatcattgccagtgctaatccaaacaacgacactagtagcaatcccaacgtcatcaatagtgctacagtcagtagcttttcaggaaaccaatag 1446 0.0 MHPLNLTTPHPTLPELDFLSPTNHNHQTPPNSLPPLNTGLQLLTANAGSDQSTVDDGVSSDAEDKRAKITELTQLQEDLRRVNAENQKLKEMLSHVNNNYTNMQMHLAALLQQQQQNKRTENTEQGVVEGRSEERKHGVGEGTMPRQFLDLGRSGKTEIDDQVSNSSCGERTRSSTPPFNKNDKDKKDPDPDSDKLTPSNPTDPSPSPEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAIGCPVRKQVQRCAEDRSILTTTYEGTHNHPLPPAAMAMASTTAAAASMLLSGSMSSVDGIVNPNLLTRAILPCSNMATLSASAPFPTVTLDLTHNPDALQQYQRPQTPFPCQPENYVSGSSPTQSQLPQLLAQALYNHSKFSGLQLSQDVGSYNNSQAPRLSLLTNQQISLADTVTTITADPNFTAALAAAISSIIASANPNNDTSSNPNVINSATVSSFSGNQ 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04390 481 MobiDBLite consensus disorder prediction 1 37 - -
Pste6g04390 481 Gene3D WRKY domain 213 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste6g04390 481 MobiDBLite consensus disorder prediction 458 481 - -
Pste6g04390 481 MobiDBLite consensus disorder prediction 113 222 - -
Pste6g04390 481 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 45 464 IPR044810 GO:0003700
Pste6g04390 481 MobiDBLite consensus disorder prediction 18 37 - -
Pste6g04390 481 MobiDBLite consensus disorder prediction 177 194 - -
Pste6g04390 481 SUPERFAMILY WRKY DNA-binding domain 221 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste6g04390 481 ProSiteProfiles WRKY domain profile. 223 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste6g04390 481 SMART WRKY_cls 228 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste6g04390 481 FunFam probable WRKY transcription factor 31 213 290 - -
Pste6g04390 481 Pfam WRKY DNA -binding domain 230 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste6g04390 481 Coils Coil 65 99 - -
Pste6g04390 481 MobiDBLite consensus disorder prediction 124 141 - -
Pste6g04390 481 MobiDBLite consensus disorder prediction 158 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04390 Pste-Chr6 33181056 33184022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04390 36 467 WRKY Transcription Factor Family AT1G62300 54.095 5.23e-135 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pste6g04390 WRKY 2.7e-24 CL0274