Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04343 atgggttgtcagggtagcaaggagaagaaatcaaaggcagaaatgagtggctatggatcaggcgcgacgggcagtgggggtggaaggaacaacggggttgaggcggcagcaactaatagtagtagtagcactggggttgcaacatcggcagcggcaaaagcagagggaggaaatagaaaaggtgtgcagaatggaagagcggtggagacaagcattctggggaaaccctttgacgacataaagaagtactacagtctggggaaggaactgggaagagggcaattcgggattacgtatctgtgcactgagaattcaagcggtgcgacgtacgcgtgcaagtccattctgaagaggaagctggtgtcgagagcggacagggaggacattaagagggagattcagatcatgcagcatttgtccggccagcccaacattgttgagttcaaaggtgcctacgaggacatgttctccgtccacctcgtcatggaactctgtgccggcggtgagctcttcgaccgaatcatctcccagggtcactactccgagagagccgccgcctccctttgccgctccatcgtcaacgttgtccacatttgtcacttcatgggcgtcatgcaccgtgatctcaagcccgaaaacttcttgctctcttctaacgaccctcacgcctctctcaaggccactgattttggtctctctgtcttcatcgacccaggttcttcccctcccatttcccttttccctcttccctcttccctcttccctcttccctcttccctctcacctctcacctctcaagattgttttttccccccacctttttcccatctcgtccttcatatctatcttatttcagggaaggtttaccatgatatggttggcagtgcttactatgttgctcctgaggtattgcgtcgtagttatggacaggaaatagatatttggagtgctggcatcatattgtatattcttctcagtggtgtaccacctttttgggctgaaactgaaaagggcatatttaatgccatactggaaggtgaaattgattttgtgagtgaaccatggccatccatatcaaacagtgctaaagatctagtcaggaagatgctaacacaggatccaaagaggcggattacttctgcccaagtccttgaacacccatggataagagaaggtggagaggcatctgataaaccaattgatagtgctgttctatccagaatgaaacaattcagggcaatgaataagctcaagaagctagcattgaaggttatcgctgaaaatctatcagaagaggagattaaaggtctcaaagcaatgtttgcaaatatggacactgacaatagtggcaccatcacctatgaagaactgaagactggcttggctcgaattggatcaagactttccgaggctgaagtgaagcaactcatggatgctgctgatgttgatggaaatgggtcaattgactatcttgaattcatttcggctacaatgcataggcacagacttgaacgtgatgaacatctatacaaagcattccagtattttgataaggatagcagtgggtacattactagagatgaattggagactgctatgacccaacatggaatgggtgatgaagcatcaataaggaaataa 1641 0.0 MGCQGSKEKKSKAEMSGYGSGATGSGGGRNNGVEAAATNSSSSTGVATSAAAKAEGGNRKGVQNGRAVETSILGKPFDDIKKYYSLGKELGRGQFGITYLCTENSSGATYACKSILKRKLVSRADREDIKREIQIMQHLSGQPNIVEFKGAYEDMFSVHLVMELCAGGELFDRIISQGHYSERAAASLCRSIVNVVHICHFMGVMHRDLKPENFLLSSNDPHASLKATDFGLSVFIDPGSSPPISLFPLPSSLFPLPSSLSPLTSQDCFFPPPFSHLVLHIYLISGKVYHDMVGSAYYVAPEVLRRSYGQEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGEIDFVSEPWPSISNSAKDLVRKMLTQDPKRRITSAQVLEHPWIREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDNSGTITYEELKTGLARIGSRLSEAEVKQLMDAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDSSGYITRDELETAMTQHGMGDEASIRK 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04343 546 FunFam Calcium-dependent protein kinase 1 86 169 - -
Pste6g04343 546 ProSiteProfiles EF-hand calcium-binding domain profile. 504 539 IPR002048 GO:0005509
Pste6g04343 546 Gene3D - 397 545 - -
Pste6g04343 546 MobiDBLite consensus disorder prediction 1 63 - -
Pste6g04343 546 ProSiteProfiles EF-hand calcium-binding domain profile. 468 503 IPR002048 GO:0005509
Pste6g04343 546 SUPERFAMILY Protein kinase-like (PK-like) 82 397 IPR011009 -
Pste6g04343 546 ProSiteProfiles Protein kinase domain profile. 84 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g04343 546 SUPERFAMILY EF-hand 413 536 IPR011992 -
Pste6g04343 546 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Pste6g04343 546 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Pste6g04343 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Pste6g04343 546 SMART serkin_6 84 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g04343 546 SMART efh_1 508 536 IPR002048 GO:0005509
Pste6g04343 546 SMART efh_1 472 500 IPR002048 GO:0005509
Pste6g04343 546 SMART efh_1 436 464 IPR002048 GO:0005509
Pste6g04343 546 FunFam Calcium-dependent protein kinase 1 397 546 - -
Pste6g04343 546 MobiDBLite consensus disorder prediction 23 49 - -
Pste6g04343 546 Pfam Protein kinase domain 84 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g04343 546 CDD STKc_CAMK 84 388 - -
Pste6g04343 546 PANTHER SERINE/THREONINE-PROTEIN KINASE 78 531 - -
Pste6g04343 546 Pfam EF-hand domain pair 437 497 IPR002048 GO:0005509
Pste6g04343 546 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Pste6g04343 546 ProSitePatterns EF-hand calcium-binding domain. 517 529 IPR018247 -
Pste6g04343 546 Pfam EF-hand domain 509 535 IPR002048 GO:0005509
Pste6g04343 546 CDD EFh 437 496 IPR002048 GO:0005509
Pste6g04343 546 Gene3D Phosphorylase Kinase; domain 1 86 169 - -
Pste6g04343 546 Gene3D Transferase(Phosphotransferase) domain 1 170 396 - -
Pste6g04343 546 ProSitePatterns Protein kinases ATP-binding region signature. 90 117 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04343 Pste-Chr6 32695211 32701241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04343 71 546 EF-hand Containing Proteins AT4G04720 74.580 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pste6g04343 Pkinase 1e-65 CL0016