Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04331 atgggtgaatttgagattgaagaagatgatgcagcctggacccggcatggctcaacaacccaaccagcaatacccacaacagcagcaacagcagcaaccctacatgatgatgccgccgcagcctcagcccctcccatgtgggccccatcggcccagccccctccacaatcggtggctcctccccaacccaccagcgccgatgaggtccgtaccctctggatcggcgatttgcagtactggatggacgaaaactatctctacacatgtttcgcacacaccggcgaggtggcttcggttaaagtcattcgaaacaaacaaactagtcaatcagagggatatgggtttattgagtttactagtcgtgccggtgctgagagaattcttcaaacatacaatggcaccattatgccaaatggtggacagaacttcagattgaattgggctacttttagtgcaggcgaaaggcgtcatgatgacagccccgatcacaccatatttgttggagacctggctgcagatgttacagattatcttctgcaagagacatttcgggcacggtatccctctgttaagggggccaaggttgtaattgataggctcactggccgtacaaagggttatggttttgttaggtttggagatgagagtgaacaggttagagctatgactgaaatgcaaggggtactttgttcaacaaggcccatgcgaattggaccagcctctaataaaaaccctagcactcagtctcagccaaaagttcttttcagttacactcttgaagatgtgcagtccaaagtcatttcttccttggtgaaagatgtggtgcatgtgatgcacgcctgtagtttgtctcctgtgggattgctctacatgttttttcatgattttagaatgaatcatcttgagttgaatttgggatacctgaagttccctactgaatgtacatcatatcagaatcctcaaggggcacagaacgagcatgatccaaataatacaactatttttgtcggcaatttggatcctaatgttacggatgaccatttgagacaagtgtttgggcagtatggagagttagttcatgtgaagattccagccggcaagagatgtggatttgtccaatttgcagacaggagctgtgcggaagaggcactgcgggttttaaatggaacccttttgggtggacaaaatgtccggctttcatggggccgcagtccgtcaaacaaacaggcccaaccggatccaaaccagtggaatggtagtggcggatattatggatacgctcagggttatgaaaattatggttatgctccagctggacaggaccccaacatgtacggcagttatcctggctatgcaaattaccaaccaccccagcaacaacagcaaataggatatagctaa 1401 0.0 MGEFEIEEDDAAWTRHGSTTQPAIPTTAATAATLHDDAAAASAPPMWAPSAQPPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKVLFSYTLEDVQSKVISSLVKDVVHVMHACSLSPVGLLYMFFHDFRMNHLELNLGYLKFPTECTSYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDPNQWNGSGGYYGYAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQIGYS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04331 466 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 408 - -
Pste6g04331 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 150 IPR000504 GO:0003723
Pste6g04331 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 332 404 IPR000504 GO:0003723
Pste6g04331 466 Gene3D - 312 413 IPR012677 -
Pste6g04331 466 SUPERFAMILY RNA-binding domain, RBD 317 429 IPR035979 GO:0003676
Pste6g04331 466 SUPERFAMILY RNA-binding domain, RBD 69 245 IPR035979 GO:0003676
Pste6g04331 466 FunFam Polyadenylate-binding protein RBP45C 312 437 - -
Pste6g04331 466 MobiDBLite consensus disorder prediction 1 65 - -
Pste6g04331 466 MobiDBLite consensus disorder prediction 47 61 - -
Pste6g04331 466 FunFam Polyadenylate-binding protein RBP45 33 154 - -
Pste6g04331 466 SMART rrm1_1 71 146 IPR000504 GO:0003723
Pste6g04331 466 SMART rrm1_1 333 400 IPR000504 GO:0003723
Pste6g04331 466 SMART rrm1_1 164 238 IPR000504 GO:0003723
Pste6g04331 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 242 IPR000504 GO:0003723
Pste6g04331 466 Gene3D - 69 149 IPR012677 -
Pste6g04331 466 FunFam Polyadenylate-binding protein RBP45C 155 247 - -
Pste6g04331 466 CDD RRM1_SECp43_like 71 151 - -
Pste6g04331 466 CDD RRM2_SECp43_like 162 241 - -
Pste6g04331 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 334 397 IPR000504 GO:0003723
Pste6g04331 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 137 IPR000504 GO:0003723
Pste6g04331 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 228 IPR000504 GO:0003723
Pste6g04331 466 Gene3D - 150 252 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04331 Pste-Chr6 32595616 32600668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04331 331 410 Eukaryotic Initiation Factors Gene Family AT4G34110 35.632 1.31e-06 48.9