Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04330 atgatgcagcctggacccggcatggctcaacaacccaaccagcaatacccacaacagcagcaacagcagcaaccctacatgatgatgccgccgcagcctcagccccctcccatgtgggccccatcggcccagccccctccacaatcggtggctcctccccaacccaccagcgccgatgaggtccgtaccctctggatcggcgatttgcagtactggatggacgaaaactatctctacacatgtttcgcacacaccggcgaggtggcttcggttaaagtcattcgaaacaaacaaactagtcaatcagagggatatgggtttattgagtttactagtcgtgccggtgctgagagaattcttcaaacatacaatggcaccattatgccaaatggtggacagaacttcagattgaattgggctacttttagtgcaggcgaaaggcgtcatgatgacagccccgatcacaccatatttgttggagacctggctgcagatgttacagattatcttctgcaagagacatttcgggcacggtttggagatgagagtgaacaggttagagctatgactgaaatgcaaggggtactttgttcaacaaggcccatgcgaattggaccagcctctaataaaaaccctagcactcagtctcagccaaaagttcttttcagttacactcttgaagatgtgcagtccaaagtcatttcttccttggtgaaagatgtggtgcatgtgatgcacgcctgtagtttgtctcctgtgggattgctctacatgttttttcatgattttagaatgaatcatcttgagttgaatttgggatacctgaagttccctactgaatgtacatcatatcagaatcctcaaggggcacagaacgagcatgatccaaataatacaactatttttgtcggcaatttggatcctaatgttacggatgaccatttgagacaagtgtttgggcagtatggagagttagttcatgtgaagattccagccggcaagagatgtggatttgtccaatttgcagacaggagctgtgcggaagaggcactgcgggttttaaatggaacccttttgggtggacaaaatgtccggctttcatggggccgcagtccgtcaaacaaacaggcccaaccggatccaaaccagtggaatggtagtggcggatattatggatacgctcagggttatgaaaattatggttatgctccagctggacaggaccccaacatgtacggcagttatcctggctatgcaaattaccaaccaccccagcaacaacagcaaataggatatagctaa 1302 0.0 MMQPGPGMAQQPNQQYPQQQQQQQPYMMMPPQPQPPPMWAPSAQPPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKVLFSYTLEDVQSKVISSLVKDVVHVMHACSLSPVGLLYMFFHDFRMNHLELNLGYLKFPTECTSYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDPNQWNGSGGYYGYAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQIGYS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04330 433 SUPERFAMILY RNA-binding domain, RBD 284 396 IPR035979 GO:0003676
Pste6g04330 433 MobiDBLite consensus disorder prediction 419 433 - -
Pste6g04330 433 Gene3D - 4 149 IPR012677 -
Pste6g04330 433 MobiDBLite consensus disorder prediction 1 27 - -
Pste6g04330 433 MobiDBLite consensus disorder prediction 413 433 - -
Pste6g04330 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 364 IPR000504 GO:0003723
Pste6g04330 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 129 IPR000504 GO:0003723
Pste6g04330 433 SMART rrm1_1 63 138 IPR000504 GO:0003723
Pste6g04330 433 SMART rrm1_1 156 205 IPR000504 GO:0003723
Pste6g04330 433 SMART rrm1_1 300 367 IPR000504 GO:0003723
Pste6g04330 433 FunFam Polyadenylate-binding protein RBP45C 279 404 - -
Pste6g04330 433 SUPERFAMILY RNA-binding domain, RBD 61 211 IPR035979 GO:0003676
Pste6g04330 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 371 IPR000504 GO:0003723
Pste6g04330 433 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 53 179 - -
Pste6g04330 433 MobiDBLite consensus disorder prediction 28 53 - -
Pste6g04330 433 FunFam Polyadenylate-binding protein RBP45 5 147 - -
Pste6g04330 433 Gene3D - 279 380 IPR012677 -
Pste6g04330 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 142 IPR000504 GO:0003723
Pste6g04330 433 CDD RRM1_SECp43_like 63 143 - -
Pste6g04330 433 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04330 Pste-Chr6 32578862 32583271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04330 298 377 Eukaryotic Initiation Factors Gene Family AT4G34110 35.632 1.32e-06 48.9