Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste6g04329 | atggattccgacgaacctccctcaccttatccccattcgcttttgaaggacatctccaacttcacaaccccgaaacgacccctttctctcccgccacccaattcttcaccgcctccaaacacaccagcagcaccaccacctcctccttccaccgccgccccaaaaaaccatccactgcggccaccaagaaactcaaggccttccaattggagcagtcccagtcctcccgcaaggcccaaatcaagaaggaacactccctcaaatccctcgccaagtccctctccgtctggctcaacttcctcctccaaaaccctacctcctgcggctgccacttctccgccgccgcttccaatgcctctcccgcctccaatggcaagcgagacagcgcccccggaacctccctcgtcggcgtcgactccacctggcggactcccaagcgccagaggtttgctagggaaaatgcggcggcgtcgcctctggagcctctcagcctgtaaagagatcttccaacaaatgaatcgcatcgccaagacaattgacgaagcaaggctgaatatgaaggcgcattgccctatagtaactgatgttgggttgaaggataaggccacgagaatcctcatgtgttataatccaatttggctgcgaattggattgtatatcattttcggtggtgactccttggtgttaaatggaaatgttgactctgatcaagatgttgtgttcttgagaatggtcattgacaagtccggttactatgagaatttggggaatattattttgaagagaattttgttgcttgtgcttgtactggataaagccaaatgccagagttacctcccactggagtatggtattgatggattggatgggggttcccctttattattcaaaccagaatcctggattaaatcaagtagtcagctcattcatgaatttctatcatctgatgtaatgcacggagaaggcaatctgctaacacatttggtgatcttaggttacaaattatcccatcaacaggatcctcttgtcgagtatgatttcagggtcagagatttatttgtagatctccaagatggattaagattgtgtagagctattcagctcttgcagcataattcttcgatcctcatggtagaaaaattggcaaactgtggtcttgccctacaatatattaggcaagctggtgggtcactacttgatgaagatggcatcatgattgtggcagaagatattgctaatggagacaaagaacttacactttccttgctctggaatatgtttgttcatttgcagacagcaatgaaagttttgttaccattggacctgcagctaccacttttggttgataaaaaatgtttagttggcgagatttctaaaattcgaggatttggcacggatctaataaacaatgaaaattctagttctatggaattgcttttgaattggattcaggcagtttgcaacaactatgattgtgcaattgacaattttcattcccttgttgatggcaaagctatctggtgcttacttgattattacttccagaaagaacttcataattcctgttcattaaaggaagttaataagaaaagtggcaacacatcaattatgtcaatcaacgaatattcagatgcactctataattttatattatcccaaaagttgactactttactggggaacttcccagaggtacttcaaattagtgagctacttcaatataatggtgcttgcagtgatcaaagtgtggtgattttgttggttttcctggcaagccaattatttgttaagaaaaaattggatcacttaaatttccacaagctcttgggttatgattgccaaagtacaaacaatagacatttgaggatgctacagtggctttcaaattctgaatcagaacaaaagcctgattcttctgatgtgtatggcaatgaagatgctgcgagaaaattcaaggccatccaagcttggtggcaagatatggctgaaagaaactgtatcgacaaacaagttgtttctaatttgcagaaatccaaaagcacagaatgcagcaccaactttagaagagaaaatgctgcaagaacaatacaactgcatttcagaggattgattgcacggcgcaagtttctgaagatgataaatgctgttactcttttgcaaactgttttcagagcttggctaagagtgaggcaagagtcagtctgcatcatattatccactcttcaagtcggtgaatcttcgtgcggaatatcgaagcaacctgaaatatataagagatatgccttgcttttcattcatagatattcctatttgaggttgaagaggtcggcactgcttatccagcaagcagttaggagttgcctctattggaggaatcagaaagaatgcagtacaagtcctgatcttaggatttcagatatggtgccagctgctattactgttcagaaatatgtccatggttggatggaacgatatattcaccagctagatcagaaagaaagctttaaatttttcccaaacaaatgcagccatcatcattcagcttgcatggaaaaattcatatgcttcaagtctactcagaagcaacacctatttgctactaaaattcaacgaaatttccgtagcacttcaaaattgagttcaaggcagctgttgtcattcagtcattcttacggcgatggtttgcacaaaaggatgcttgtgcacgtcggaatcatctgtttgcaacaaaaattcaacaaaactttcgtaggacagttcaaaatgaagcttaaggcagttgttatcattcagtcattcttacggcgctggtttgctcgaaaggatgcttgtgcacgaaggaatcacattgttgaaattcaaaggcattgccgtggttggcttgtgaagcgggatttcttgttccaaaaagattccatagtaaagatccagtgtgtcattcgaagcttgaagtgccaaaagtctttcaattgccagaaagatgctgctttggagatccagcgctttataaggggacatttaactcggaatcagctattaggtggttcttccaagtcacatgcagtcattcctactagttgcgtttcaagaccatttggcttttatagttttcaactggagctatttttgttttcggttgtgaaattgcaacgatggtggaagagtattttgttgcttaaatcaatgaataagtcggccatcactattcagtcatgtacccgtgggtggatagccaggcaaaaggctactattcagagacaacatgttagcatccaacgttggtggaaagatctcttgttaaagaaattgatgacgagatctgccattgctattcagtcttgtactcgtgggtggatagctaggcgaaaggccaatgttgaaagacgtcgtattattgtcatccaatcccactggagaggttacatcacacgtaaagaatcaaaagaacagttagttgatttgcgcttgagaatgcaaaagtctgctagaaatgtggatgacagcaagcgtctcataaacagactgttggcagcgctttcagaactacttaatatgaagagtcttagtaacatccttcatacttgttcaaccttggatatggcaacagagcattctcagaaatgttgtgaagaacttgtggctgcaggggctattgacactttgctgcagctaattcaaacagtcagccgaagtatacctgatcaggaggttctaaagcatgccttgtcaactctccgaaatctctcccactatcctcatctactacaagtgttaatccaaagtcgtggttctgtacgtataattgtcctcgagttcttgaggcgttgtgacaatattcaagtccctgccttgctaaaacgactgcacagtcttgttgaggaacttacacggaagggaatatacgagaaaagaaatcctagggctcctagcctggttatcaaagaaaacagagagagaaggttgaaggaggctgctgagattctaaagttgataacaagcgcctga | 4005 | 0.0 | MDSDEPPSPYPHSLLKDISNFTTPKRPLSLPPPNSSPPPNTPAAPPPPPSTAAPKNHPLRPPRNSRPSNWSSPSPPARPKSRRNTPSNPSPSPSPSGSTSSSKTLPPAAATSPPPLPMPLPPPMASETAPPEPPSSASTPPGGLPSARGLLGKMRRRRLWSLSACKEIFQQMNRIAKTIDEARLNMKAHCPIVTDVGLKDKATRILMCYNPIWLRIGLYIIFGGDSLVLNGNVDSDQDVVFLRMVIDKSGYYENLGNIILKRILLLVLVLDKAKCQSYLPLEYGIDGLDGGSPLLFKPESWIKSSSQLIHEFLSSDVMHGEGNLLTHLVILGYKLSHQQDPLVEYDFRVRDLFVDLQDGLRLCRAIQLLQHNSSILMVEKLANCGLALQYIRQAGGSLLDEDGIMIVAEDIANGDKELTLSLLWNMFVHLQTAMKVLLPLDLQLPLLVDKKCLVGEISKIRGFGTDLINNENSSSMELLLNWIQAVCNNYDCAIDNFHSLVDGKAIWCLLDYYFQKELHNSCSLKEVNKKSGNTSIMSINEYSDALYNFILSQKLTTLLGNFPEVLQISELLQYNGACSDQSVVILLVFLASQLFVKKKLDHLNFHKLLGYDCQSTNNRHLRMLQWLSNSESEQKPDSSDVYGNEDAARKFKAIQAWWQDMAERNCIDKQVVSNLQKSKSTECSTNFRRENAARTIQLHFRGLIARRKFLKMINAVTLLQTVFRAWLRVRQESVCIILSTLQVGESSCGISKQPEIYKRYALLFIHRYSYLRLKRSALLIQQAVRSCLYWRNQKECSTSPDLRISDMVPAAITVQKYVHGWMERYIHQLDQKESFKFFPNKCSHHHSACMEKFICFKSTQKQHLFATKIQRNFRSTSKLSSRQLLSFSHSYGDGLHKRMLVHVGIICLQQKFNKTFVGQFKMKLKAVVIIQSFLRRWFARKDACARRNHIVEIQRHCRGWLVKRDFLFQKDSIVKIQCVIRSLKCQKSFNCQKDAALEIQRFIRGHLTRNQLLGGSSKSHAVIPTSCVSRPFGFYSFQLELFLFSVVKLQRWWKSILLLKSMNKSAITIQSCTRGWIARQKATIQRQHVSIQRWWKDLLLKKLMTRSAIAIQSCTRGWIARRKANVERRRIIVIQSHWRGYITRKESKEQLVDLRLRMQKSARNVDDSKRLINRLLAALSELLNMKSLSNILHTCSTLDMATEHSQKCCEELVAAGAIDTLLQLIQTVSRSIPDQEVLKHALSTLRNLSHYPHLLQVLIQSRGSVRIIVLEFLRRCDNIQVPALLKRLHSLVEELTRKGIYEKRNPRAPSLVIKENRERRLKEAAEILKLITSA | 1334 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste6g04329 | 1334 | SUPERFAMILY | ARM repeat | 1173 | 1272 | IPR016024 | - | |
| Pste6g04329 | 1334 | Gene3D | - | 1154 | 1333 | IPR011989 | - | |
| Pste6g04329 | 1334 | ProSiteProfiles | IQ motif profile. | 1104 | 1131 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | ProSiteProfiles | IQ motif profile. | 992 | 1021 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | Gene3D | - | 688 | 734 | - | - | |
| Pste6g04329 | 1334 | Gene3D | - | 1102 | 1151 | - | - | |
| Pste6g04329 | 1334 | Gene3D | - | 971 | 1014 | - | - | |
| Pste6g04329 | 1334 | Gene3D | - | 921 | 970 | - | - | |
| Pste6g04329 | 1334 | MobiDBLite | consensus disorder prediction | 108 | 140 | - | - | |
| Pste6g04329 | 1334 | PANTHER | UNCHARACTERIZED | 34 | 964 | - | - | |
| Pste6g04329 | 1334 | ProSiteProfiles | IQ motif profile. | 946 | 975 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | SMART | arm_5 | 1205 | 1250 | IPR000225 | GO:0005515 | |
| Pste6g04329 | 1334 | ProSiteProfiles | IQ motif profile. | 689 | 717 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | MobiDBLite | consensus disorder prediction | 26 | 56 | - | - | |
| Pste6g04329 | 1334 | ProSiteProfiles | IQ motif profile. | 923 | 952 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | Pfam | Calponin homology (CH) domain | 348 | 431 | IPR001715 | GO:0005515 | |
| Pste6g04329 | 1334 | Gene3D | - | 1045 | 1082 | - | - | |
| Pste6g04329 | 1334 | CDD | CH_ASPM_rpt1 | 324 | 426 | - | - | |
| Pste6g04329 | 1334 | SMART | iq_5 | 711 | 732 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | SMART | iq_5 | 1126 | 1148 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | SMART | iq_5 | 945 | 967 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | SMART | iq_5 | 991 | 1013 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | SMART | iq_5 | 772 | 794 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | SMART | iq_5 | 688 | 710 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | SMART | iq_5 | 1103 | 1125 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | SMART | iq_5 | 968 | 990 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | SMART | iq_5 | 806 | 828 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | SMART | iq_5 | 1061 | 1083 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | SMART | iq_5 | 922 | 944 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1092 | 1149 | IPR027417 | - | |
| Pste6g04329 | 1334 | MobiDBLite | consensus disorder prediction | 68 | 93 | - | - | |
| Pste6g04329 | 1334 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 921 | 1012 | IPR027417 | - | |
| Pste6g04329 | 1334 | MobiDBLite | consensus disorder prediction | 1 | 149 | - | - | |
| Pste6g04329 | 1334 | ProSiteProfiles | IQ motif profile. | 1127 | 1155 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | Pfam | Armadillo/beta-catenin-like repeat | 1205 | 1249 | IPR000225 | GO:0005515 | |
| Pste6g04329 | 1334 | ProSiteProfiles | IQ motif profile. | 1062 | 1090 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | Pfam | IQ calmodulin-binding motif | 925 | 942 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | Pfam | IQ calmodulin-binding motif | 994 | 1012 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | Pfam | IQ calmodulin-binding motif | 1128 | 1146 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | Pfam | IQ calmodulin-binding motif | 691 | 709 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | Pfam | IQ calmodulin-binding motif | 1105 | 1123 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | Pfam | IQ calmodulin-binding motif | 1064 | 1081 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | Pfam | IQ calmodulin-binding motif | 950 | 966 | IPR000048 | GO:0005515 | |
| Pste6g04329 | 1334 | Gene3D | - | 334 | 433 | IPR036872 | - | |
| Pste6g04329 | 1334 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 1216 | 1263 | IPR000225 | GO:0005515 | |
| Pste6g04329 | 1334 | SUPERFAMILY | Calponin-homology domain, CH-domain | 265 | 519 | IPR036872 | - | |
| Pste6g04329 | 1334 | Coils | Coil | 1144 | 1164 | - | - | |
| Pste6g04329 | 1334 | Gene3D | - | 468 | 597 | IPR036872 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste6g04329 | 7 | 152 | C2H2 Transcription Factor Family | AT1G30970 | 31.126 | 6.97e-10 | 60.8 |