Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04313 atggaaaccaacacactctcactgttgttcccttttcctattttgggtgttctttcatctgaaaagccaactcctacttcctataacgttcgttcaaaatcatacaaccattttctcaaacacctctccgacactgctaactttaatcgcaccttccacttcacaattccacaagccattctaaatccttctcccgtaaccactcccaccctcagagaaatatgccaatcgcatgttcctgagcatatactgcaaaggatggaagagattggatatgtaatgcctacagatatccagagggaagcactgccttcccttttttccgggcgtgactgcatacttcatgcgcagacaggttctgggaagacactcacatacctccttttgatccattccctcatcaatgctggaaaatcctctgtgcaagccctagttgtggtgcccacccgggagcttggcatgcaagtaactaaggttgctaggacattggctgcgaagccaactggagtcagtggggagcagaagtcatgttccatcatggctctgctagatggaggaacactgaaaagacacaagacttggttaaaggctgagcctccaacaatagtggttgcaacagttgggagtttatgccaaatgcttgaacgacatattttttcacttgaaactgtgcaggtgctgattgttgatgaggttgattgcattttcaattcttcaaagcaagtgagttctcttcgaaagattttgacttcatattcatcttgcaataaccgtcagacagtttttgcaagtgcatctataccacagcacaaccggtttattcatgactctgttcagcagaaatggacaaagagagatgtggtccatattcatgtcagtgcagtggagcccatgccatctcgcctatatcatagatttataacatgtgataccaaaagaaagttacaaaccctgttatccttgatacaatctgatgcacctgagtctggcattgtatttgttgctgagcagtctgagaagtcaaaaaaggctggaaaggctccatcaacatcccttctgattgactttttgaagtcatcctaccaaggtgatttagatatcctcctccttgaagacaaaatgaatttcaattcacgagcagcttcactgttggaggttaggaaaggaggtggctatcttcttgtagcaacagatatagctgctaggggagttgatcttccagaaatgtctcatatttacaactttgatctgccaaggactgctatagattatctccatcgagcagggcgaacttgtagaaaaccgttttctgacgtcaattgtactgttaccagcattattattccagatgagcgatttgttctgcagagatatgaaaatgagttgatgtttaactgtgaagaacttactccataa 1416 0.0 METNTLSLLFPFPILGVLSSEKPTPTSYNVRSKSYNHFLKHLSDTANFNRTFHFTIPQAILNPSPVTTPTLREICQSHVPEHILQRMEEIGYVMPTDIQREALPSLFSGRDCILHAQTGSGKTLTYLLLIHSLINAGKSSVQALVVVPTRELGMQVTKVARTLAAKPTGVSGEQKSCSIMALLDGGTLKRHKTWLKAEPPTIVVATVGSLCQMLERHIFSLETVQVLIVDEVDCIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRLYHRFITCDTKRKLQTLLSLIQSDAPESGIVFVAEQSEKSKKAGKAPSTSLLIDFLKSSYQGDLDILLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDVNCTVTSIIIPDERFVLQRYENELMFNCEELTP 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04313 471 Gene3D - 299 469 IPR027417 -
Pste6g04313 471 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 103 285 IPR014001 -
Pste6g04313 471 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 471 IPR001650 -
Pste6g04313 471 CDD SF2_C_DEAD 304 433 - -
Pste6g04313 471 CDD DEADc 83 269 - -
Pste6g04313 471 SMART helicmild6 351 435 IPR001650 -
Pste6g04313 471 Pfam Helicase conserved C-terminal domain 314 433 IPR001650 -
Pste6g04313 471 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 73 462 - -
Pste6g04313 471 Gene3D - 69 289 IPR027417 -
Pste6g04313 471 Pfam DEAD/DEAH box helicase 96 269 IPR011545 GO:0003676|GO:0005524
Pste6g04313 471 SMART ultradead3 91 306 IPR014001 -
Pste6g04313 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 437 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04313 Pste-Chr6 32375980 32383121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04313 73 460 Eukaryotic Initiation Factors Gene Family AT1G72730 27.708 4.82e-30 119