Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04312 atggctaatttcacttcttcctcttcttctcctttgcctccgctcatgtcacacatttcaactccctcatcttctgccctttcgacgacacttccgaggacacctgcagcatatgtctggagccattcagcaccgatgaccccgccaccgtatgatccaccgtcaaactcttttttttccttcacccattacctcaacttgttctattttgactttctgcatccgggcactgatcccatgtctaagtctaatcacggtaccatggtttatcttgggatgaattgcaagttgcatgttgtagaatatcacacggaaacttttgctattaccagttgcaaacatgaatatcatctgcactgtattcttgagtggtcgcagagaagcaaagaatgcccaatatgttggcagttacttttcttgaaagaccctgatagccaagagcttctagatgcagtggagactgaaaaacgcttaagttcaagaactgcatcttcacatgcattcacgaaccctcgtggcccccttcaacggcttaacaatgaccatgatgattcttgttccgatgactccgattttgatgaacaacttatgcagcacctagttacggctacaggtagagctcattatatctgcagacgggaaagacaaagatcccctggagcaggtccttcagaagttatcgttttaagctcttctgtgcatgcctcagggatgcaaccaacacttgctacttcatctggggatagttcaccaacttatggtgtatcctctgcttttcacaaacaacctcctacatttgctttttcttctattggtatggttacaacaaatacttcttctgagagtgacatcccttccaaacccagagtcatctacaaccagccatcacctgagagtgcaaggagactaaacagttctgaaatgttctccctccctgagtccatcaaatccaaactttctgctgcatcagccagatgtaaggagtcaatgtcaaaaaatgcccgtggtcttaaagaaaagttgattgctcgtaatgcctcaatgaaagagctgagtaaaggtgttcagcgtgagatgaatgctggcatcgctggcgttgcaagaataattgaacgccttgatcttacctcaaaacggtcctcatctcctcttatccctgcgaaagggaagtctgtccaagagaatggtattgagcaatttcctaatgaagagaatggggttttggttggcaatgttacttcaactgctgctggagtggaaattcctccttatgttcagaatgaagatgatgctgtgaaatctaccatgttgcactga 1317 0.0 MANFTSSSSSPLPPLMSHISTPSSSALSTTLPRTPAAYVWSHSAPMTPPPYDPPSNSFFSFTHYLNLFYFDFLHPGTDPMSKSNHGTMVYLGMNCKLHVVEYHTETFAITSCKHEYHLHCILEWSQRSKECPICWQLLFLKDPDSQELLDAVETEKRLSSRTASSHAFTNPRGPLQRLNNDHDDSCSDDSDFDEQLMQHLVTATGRAHYICRRERQRSPGAGPSEVIVLSSSVHASGMQPTLATSSGDSSPTYGVSSAFHKQPPTFAFSSIGMVTTNTSSESDIPSKPRVIYNQPSPESARRLNSSEMFSLPESIKSKLSAASARCKESMSKNARGLKEKLIARNASMKELSKGVQREMNAGIAGVARIIERLDLTSKRSSSPLIPAKGKSVQENGIEQFPNEENGVLVGNVTSTAAGVEIPPYVQNEDDAVKSTMLH 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04312 438 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 108 143 - -
Pste6g04312 438 MobiDBLite consensus disorder prediction 160 190 - -
Pste6g04312 438 MobiDBLite consensus disorder prediction 238 257 - -
Pste6g04312 438 SUPERFAMILY RING/U-box 103 141 - -
Pste6g04312 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 165 IPR013083 -
Pste6g04312 438 MobiDBLite consensus disorder prediction 277 298 - -
Pste6g04312 438 Pfam RING-H2 zinc finger domain 106 134 IPR024766 GO:0008270
Pste6g04312 438 ProSiteProfiles Zinc finger RING-type profile. 95 134 IPR001841 -
Pste6g04312 438 MobiDBLite consensus disorder prediction 161 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04312 Pste-Chr6 32367213 32370215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04312 80 138 C3H Transcription Factor Family AT5G15790 39.062 8.04e-07 48.1