Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04269 atgaagagaagcggtaaagggagatctgaacgaaagaagcaccacagctcagcttccctgaggcatttcttctgttgggtgactatggtgagggttagtgtgttgaacgatgctctcaagagcatgtacaatgctgagaaaaggggaaagcgtcaagtcatgattaggccatcttccaaagtcattatcaaattccttttggtgatgcagaagcacgggtacattggagagtttgagtatgttgatgaccatagggctggcaaaatcgtggttgaattgaacgggagactgaacaagtgtggcgttattagtccccgttttgacgtcggtgtcaaagagattgaaggttggactgctaggcttcttccctcaagacagttcgggtatattgtattgaccacctctgctggtatcatggatcatgaagaggcgaggagaaaaaatgtcggtgatctgaaaaaccacaggcgcatattccctgaggcatctcttccctgttgtggtactatggtgagggttagtgtgttgaacgatgctctcaagagcatgtacaatgccgagaaaaggggaaagcgtcaagtcatgattaggccatcttctaaagtcattataaaattccttttggtgatgcagaagcacgggtacataggagagtttgagtatgttgatgaccatagggctggcaaaatcgtggttgaattgaacggcagactgaacaagtgtggcgttattagtccccgttttgacgtcggtgtcaaagagattgaaggttggactgctaggcttcttccctcaagacagataactaatagcttgtatagcactaccatattagtcttctaccactgccccatagagatgggaagcctgcaatggcagtgcgccactgccataggccacaacggtgtttctataaggcgaatgttgtcattccatcatcagccgttgataaccattgtaataagtgctgattctttcattggtttttccgctgaaatgcggttggcatgtgctatacatatggttttcggcctataccttacagtcaattatgctaattttatgcagtttgggtacattgtattgactacttcggctgggatcatggatcatgaagaggcaagaagaaagaacgtgggcggtaaagttttaggcttcttctactag 1167 0.0 MKRSGKGRSERKKHHSSASLRHFFCWVTMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGDLKNHRRIFPEASLPCCGTMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQITNSLYSTTILVFYHCPIEMGSLQWQCATAIGHNGVSIRRMLSFHHQPLITIVISADSFIGFSAEMRLACAIHMVFGLYLTVNYANFMQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04269 388 ProSitePatterns Ribosomal protein S8 signature. 128 145 IPR000630 GO:0003735|GO:0005840|GO:0006412
Pste6g04269 388 PANTHER 40S RIBOSOMAL PROTEIN S15A 355 387 IPR000630 GO:0003735|GO:0005840|GO:0006412
Pste6g04269 388 Gene3D - 98 152 - -
Pste6g04269 388 SUPERFAMILY Ribosomal protein S8 353 388 IPR035987 GO:0003735|GO:0005840|GO:0006412
Pste6g04269 388 ProSitePatterns Ribosomal protein S8 signature. 358 375 IPR000630 GO:0003735|GO:0005840|GO:0006412
Pste6g04269 388 FunFam 40S ribosomal protein S15a 98 152 - -
Pste6g04269 388 SUPERFAMILY Ribosomal protein S8 173 276 IPR035987 GO:0003735|GO:0005840|GO:0006412
Pste6g04269 388 FunFam 40S ribosomal protein S15a 170 238 - -
Pste6g04269 388 FunFam 40S ribosomal protein S15a 29 97 - -
Pste6g04269 388 Gene3D - 239 388 - -
Pste6g04269 388 SUPERFAMILY Ribosomal protein S8 32 150 IPR035987 GO:0003735|GO:0005840|GO:0006412
Pste6g04269 388 Gene3D - 29 97 - -
Pste6g04269 388 Gene3D - 170 238 - -
Pste6g04269 388 Pfam Ribosomal protein S8 176 256 IPR000630 GO:0003735|GO:0005840|GO:0006412
Pste6g04269 388 Pfam Ribosomal protein S8 356 388 IPR000630 GO:0003735|GO:0005840|GO:0006412
Pste6g04269 388 Pfam Ribosomal protein S8 35 150 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04269 Pste-Chr6 31892498 31910402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04269 356 388 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 100.000 7.37e-16 72.0