Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04215 atgggaaggtaccgtagccgaagcagaagctatagccctcggcgccgaagcaggaccccacagccaccgcgtggacggaagcgctatgtcgatgatcgccatgctgacagcaggtcttacagagaccgccgctcacctcttccttctggcttgctcgttcgcaatctcccccttgacgccaggcctgaggatctaaggatcccatttgagcgctatggtcctgtgaaggatgtttatcttcctaaaaattattacactggtgagccccggggatttggatttgtgaaatatcgatatggggaagatgcagctgaggcaaagcaacatcttaatcatactatcattggtggccgtgaaataagaattgttttcgctgaggaaaataggaaaactcctcaagaaatgcgtcttagttctcgaggaagtggtcgatatggaggcagtagaagaaggaatcgcactagatccccgcggcgccgatatcgttcctcctctcggtctccgtcacctgccagggatgattcaagagtccatgatttcgttgcaattaattgtctgttgaatggtgcaactaaatga 579 0.0 MGRYRSRSRSYSPRRRSRTPQPPRGRKRYVDDRHADSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRLSSRGSGRYGGSRRRNRTRSPRRRYRSSSRSPSPARDDSRVHDFVAINCLLNGATK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04215 192 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Pste6g04215 192 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 141 - -
Pste6g04215 192 MobiDBLite consensus disorder prediction 1 47 - -
Pste6g04215 192 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 50 185 - -
Pste6g04215 192 MobiDBLite consensus disorder prediction 146 162 - -
Pste6g04215 192 SUPERFAMILY RNA-binding domain, RBD 51 155 IPR035979 GO:0003676
Pste6g04215 192 Gene3D - 23 167 IPR012677 -
Pste6g04215 192 MobiDBLite consensus disorder prediction 1 23 - -
Pste6g04215 192 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 121 IPR000504 GO:0003723
Pste6g04215 192 SMART rrm1_1 50 123 IPR000504 GO:0003723
Pste6g04215 192 MobiDBLite consensus disorder prediction 24 43 - -
Pste6g04215 192 MobiDBLite consensus disorder prediction 130 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04215 Pste-Chr6 31411652 31414576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04215 53 111 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.57e-06 45.4