Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04206 atgaaatccagtggaaaggagcattcaatgccatatcaagtgatatcaagggcaatggagactgtcatcaatcaacatggtcttgatattgaagctttgaagtcatcacgtcttccattgactggtggtcctcaaataggatcttcttcacagccagtgaatgttacaaaggaccccagagtgggcttggctgaaaatgaggtgtccaaaatggaccctttttcttctgggcggccaccggttgccccaagtggtggaggacctgattattatcaaggatctgtggctcagaggagtagtcagtcttttgatcaaggaagtccatctagtttggattctaggtctgctaactcgcagtcacaagacagacgtgaaactgcaaattgggacaaacaggtgaatcaaaaggatggtaagaaagctacgacaaagaggaagaggggagatacatcctcacctgttgaactgcatgttgacagtccttctcagttggatcctcgcaatactggtgttaatccaaggaaggggaaaatgaccaaggctgaatcatcagatggtcttccagttaaaagcggtgaactaaccaactataacatggctccaaatggtggtcagatggatagtgtttcgactttacctggtagcatgagaacaatgcttagagcaaatcaagaaggtcttcatttaatggcaaagcaaactgatttgacaaagatgggcaatccaattgtgcgagtaccaaattcaaagtatgcagaagatacagaagtttcctctgcacatattgcttcagggaaacagcaaggtacttatggaaaggttcatgcagggatggctattgctggtggtacatcttcaatggctgaagctttctcaaattcaatgcaatatggtggtgcagttgagcgtgatgggggaagttctgctatagctgatggacataagattgctcagattggcaggcaaaactcagaaatggctatgcttagacaaggtgttccccctagagagacaggaaaatccactgttcctgccatgcctgcagtatctgccatgcctttcaaggaacaacagttaaaacagcttcgagctcagtgccttgtttttttagcatttaggaatggtttagcaccaaagaaactacatcttgaaattgcacttggaacagccttttccagagaagatggttctcgcaaagatctaattgaccacaagggaaaattacaatcttttaatgaaccaggtaacgcatctggggtcatgatgccatttggaggtccaagcaatgtgaggcagacagataaaaatccttcaggttcctcttcagctggcaaaattgttgagaccgactctttgtcaaagggaactgagagcccaagaacgttggatgacaaaggtaatcttcatgtcacaaaaagaggagaggttgatagacgaattcaagaaagagtgactgcgcaagcttcttcagtcacttcatgtcaacagcaagattcttcaagtacaaggggtgctgtagtcggtaataatcatttggatgatgttgacaccggtaatatgcaggttggaagacctaaccaatcttctgttgttggcccaactagctgggctggttttgctggtgctaatgaggctttaaagggacctcctcaaatctctaccattccaaatgagttgcctatagaaagaagagagaatattcctagtctgtttcaaaatgtgggtaacaattgtggttcaaggaatcacaattctgttaatcatctgtcgtctttttctttgaaagagcaatggaaacctgttccagggacagacagtgatcttcatggagcaaccatagtgaaggatggaaatgtgatgataaaacatgtttctccagatggcttcaaaactgttccagttgataatgcatcaaagcgtggcatatcttttgctccagagcaagatgggaatgagaggttggtatcagccgatttgccaccttctccaaaatatacaatgttagaaaggtggatcattgatcagcaggaaaagaggcttctagttgagcaaaattgggtgcaaaaacagcagaagacaaagcaaagaatggctacaagttttcacaaattaaaggaaaatgtgagctcctctgaagatatttctgctaaaaccaaaagtgtcatagagttgaaaaaacttcaactattagagctccaacgtcgtctccggagtgattttctgaatgatttcttcaaaccaattacaactgagatggaacatttaaaatcaattaagaaacataggcatggtaggagggtcaaacaacttgaaagatttgagcagaaaatgaaggaagagcgtcagaaacggattcgtgagaggcagaaggagttcttcagtgagatagaagttcacaaggagaaacttgatgatgtattcaaaatcaagagggaaaggtggaagggtttcaatagatatgtgaaggagttccataagagaaaagaacgtattcatcgtgagaagattgatagaatccagcgggaaaagattaatttactgaaaataaatgatgtggaggggtatcttcgtatggtgcaggatgcaaaatcggatcgtgtgaagcaactacttaaagagactgagaagtatcttcaaaagcttgggtccaagctacaagaagcaaaggctgcggctggacgatttgggcaggacgttgatgagacaggaaatgttaattttcttgagaatagtgaaacagaaaatgaggatgaaagtgatcaggcgaaggcaagttctttcatgcatctctttcttagtataaaggagagcatcgcagagcagccagctagtttgcaaggcgggaaattgagggaatatcaaatgaatggcctgcggtggctggtttccctatacaacaatcatttgaatggaattcttgctgatgaaatgggcctgggaccatttcttgtggttgtgccctcttcagttctacctggttgggactcagaaataaacttctgggctcctagtgttcataaaattgtctatgctggaccaccagaggagaggcgtcggttattcaaggaaaggattgttcatcagaaattcaatgttcttttgactacgtatgaatatctgatgaataagcatgatagaccgaagctgagcaaaatacactggcattacataattattgatgaaggccaccgcataaagaatgcttcttgcaagttgaatgctgacttgaaacactatcagagctctcacagattgctgttaactggaacaccattgcagaacaatcttgaagaactatgggcactacttaatttcttgttaccgaacatattcaattcatcggaggacttctctcaatggtttaacaagccatttgagagtgctggagatagctcacctgatgaagctttattgtctgaagaggagaatctcttgatcataaatcgtctgcaccaagttttgagacctttcgtacttaggagactgaagcacaaggttataatccttaattttaagcttgttaagcataagtgcttctacgccttcattttctgtattggatga 3564 0.0 MKSSGKEHSMPYQVISRAMETVINQHGLDIEALKSSRLPLTGGPQIGSSSQPVNVTKDPRVGLAENEVSKMDPFSSGRPPVAPSGGGPDYYQGSVAQRSSQSFDQGSPSSLDSRSANSQSQDRRETANWDKQVNQKDGKKATTKRKRGDTSSPVELHVDSPSQLDPRNTGVNPRKGKMTKAESSDGLPVKSGELTNYNMAPNGGQMDSVSTLPGSMRTMLRANQEGLHLMAKQTDLTKMGNPIVRVPNSKYAEDTEVSSAHIASGKQQGTYGKVHAGMAIAGGTSSMAEAFSNSMQYGGAVERDGGSSAIADGHKIAQIGRQNSEMAMLRQGVPPRETGKSTVPAMPAVSAMPFKEQQLKQLRAQCLVFLAFRNGLAPKKLHLEIALGTAFSREDGSRKDLIDHKGKLQSFNEPGNASGVMMPFGGPSNVRQTDKNPSGSSSAGKIVETDSLSKGTESPRTLDDKGNLHVTKRGEVDRRIQERVTAQASSVTSCQQQDSSSTRGAVVGNNHLDDVDTGNMQVGRPNQSSVVGPTSWAGFAGANEALKGPPQISTIPNELPIERRENIPSLFQNVGNNCGSRNHNSVNHLSSFSLKEQWKPVPGTDSDLHGATIVKDGNVMIKHVSPDGFKTVPVDNASKRGISFAPEQDGNERLVSADLPPSPKYTMLERWIIDQQEKRLLVEQNWVQKQQKTKQRMATSFHKLKENVSSSEDISAKTKSVIELKKLQLLELQRRLRSDFLNDFFKPITTEMEHLKSIKKHRHGRRVKQLERFEQKMKEERQKRIRERQKEFFSEIEVHKEKLDDVFKIKRERWKGFNRYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKAAAGRFGQDVDETGNVNFLENSETENEDESDQAKASSFMHLFLSIKESIAEQPASLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGPFLVVVPSSVLPGWDSEINFWAPSVHKIVYAGPPEERRRLFKERIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESAGDSSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVIILNFKLVKHKCFYAFIFCIG 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04206 1187 MobiDBLite consensus disorder prediction 35 205 - -
Pste6g04206 1187 Pfam SNF2-related domain 954 1168 IPR000330 GO:0005524|GO:0140658
Pste6g04206 1187 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 980 1109 IPR014001 -
Pste6g04206 1187 MobiDBLite consensus disorder prediction 457 482 - -
Pste6g04206 1187 SMART ultradead3 946 1120 IPR014001 -
Pste6g04206 1187 ProSiteProfiles HSA domain profile. 775 849 IPR014012 -
Pste6g04206 1187 MobiDBLite consensus disorder prediction 407 521 - -
Pste6g04206 1187 PANTHER SNF2/RAD54 HELICASE FAMILY 665 1166 - -
Pste6g04206 1187 MobiDBLite consensus disorder prediction 189 205 - -
Pste6g04206 1187 MobiDBLite consensus disorder prediction 429 456 - -
Pste6g04206 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 926 1161 IPR027417 -
Pste6g04206 1187 MobiDBLite consensus disorder prediction 41 56 - -
Pste6g04206 1187 SMART QLQ_2 352 387 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pste6g04206 1187 Coils Coil 871 891 - -
Pste6g04206 1187 MobiDBLite consensus disorder prediction 93 123 - -
Pste6g04206 1187 MobiDBLite consensus disorder prediction 483 507 - -
Pste6g04206 1187 MobiDBLite consensus disorder prediction 155 169 - -
Pste6g04206 1187 Gene3D - 921 1176 IPR038718 -
Pste6g04206 1187 Coils Coil 770 790 - -
Pste6g04206 1187 MobiDBLite consensus disorder prediction 124 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04206 Pste-Chr6 31311680 31320477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04206 980 1163 RAD5 or RAD16-like Gene Family AT5G22750 29.255 3.50e-16 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste6g04206 SNF2_N 8.9e-47 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04206 6 31311680 31320477 Pste6g04206 6 31311680 31320477 ECH