Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04203 atgacactggtccctcagttggaaggtggaaggtggaagttggaaattggaaattggaaattggaaatggataaagggttggagcagagttggtgggccaacatgcctaacgagcttctcagagaggtccttctccgaattgagtcatcccagcccacctggccgcggcggaggaccgtcgtggcatgtgccggagtgtgccgcacctggaggctcatcatcaaacaattagtcaagccacctctcctctcttccaacataaccttccccatctctctcaaacagcctggccccagggaaaatctacttcactgcttcattaggcgcaacagcaccactcacacatattatctgtttctcagtttatcaactgcactagcccaagatggcaagttccttctggctgcacgcaagttcagacgccctacatgcacagattatattatctccctcaatgcccatgatatgtccagggaaaccaatgcctatttggggaaattgagatcaaattttttggggacaaagttcacaatctacgatacccagctgcctccagcaggggcaaagatgacaaaaagttgctccgctaagctggtaaatccaaaacaagtttcacctagggtccctacaggcaactatccagttgctcaaatctcatatgaactcaatgtactgggctccagaggaccaaggagaatgcattgtgtcatggatacaattcctgcttctgctattcaaccccaaggtgtagacccttcacagaccaattttcctgttggtaacatggatacttcattcccattctcttggacaaactcaacttgtctacaaaactctatatctgaacacgagaacaataaaaaagatgacgtgctagtgttgagaaacaaggctgccaggtggcatgaacagctgcagtgttggtgcttgaactttcatgggcgagtgactattgcttcagttaaaaactttcagctggccgcttccccagaaaatggacatgctggtcaactagaagatgaggttatcctccaatttggaaaagtggggaaggacatgtttacaatggattaccgataccctatctcagcatttcaggcatttgcaatctgcctcagcagctttgctaccacagttgcttgtgaatga 1149 0.0 MTLVPQLEGGRWKLEIGNWKLEMDKGLEQSWWANMPNELLREVLLRIESSQPTWPRRRTVVACAGVCRTWRLIIKQLVKPPLLSSNITFPISLKQPGPRENLLHCFIRRNSTTHTYYLFLSLSTALAQDGKFLLAARKFRRPTCTDYIISLNAHDMSRETNAYLGKLRSNFLGTKFTIYDTQLPPAGAKMTKSCSAKLVNPKQVSPRVPTGNYPVAQISYELNVLGSRGPRRMHCVMDTIPASAIQPQGVDPSQTNFPVGNMDTSFPFSWTNSTCLQNSISEHENNKKDDVLVLRNKAARWHEQLQCWCLNFHGRVTIASVKNFQLAASPENGHAGQLEDEVILQFGKVGKDMFTMDYRYPISAFQAFAICLSSFATTVACE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04203 382 Pfam F-box domain 32 76 IPR001810 GO:0005515
Pste6g04203 382 PANTHER TUBBY-RELATED 29 379 - -
Pste6g04203 382 Pfam Tub family 93 377 IPR000007 -
Pste6g04203 382 SUPERFAMILY Tubby C-terminal domain-like 82 382 IPR025659 -
Pste6g04203 382 PRINTS Tubby superfamily signature 147 163 IPR000007 -
Pste6g04203 382 PRINTS Tubby superfamily signature 163 187 IPR000007 -
Pste6g04203 382 PRINTS Tubby superfamily signature 339 358 IPR000007 -
Pste6g04203 382 PRINTS Tubby superfamily signature 294 311 IPR000007 -
Pste6g04203 382 PRINTS Tubby superfamily signature 312 328 IPR000007 -
Pste6g04203 382 PRINTS Tubby superfamily signature 360 382 IPR000007 -
Pste6g04203 382 PRINTS Tubby superfamily signature 212 239 IPR000007 -
Pste6g04203 382 Gene3D Tubby Protein; Chain A 90 382 IPR025659 -
Pste6g04203 382 FunFam Tubby-like F-box protein 89 382 - -
Pste6g04203 382 ProSitePatterns Tub family signature 1. 312 325 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04203 Pste-Chr6 31247423 31253245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04203 26 382 TUB Transcription Factor Family AT2G47900 64.088 2.61e-170 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pste6g04203 Tub 6.5e-107 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04203 6 31247423 31253245 Pste6g04203 6 31247423 31253245 ECH
Pste6g04203 6 31247423 31253245 Pste2g02390 2 24095243 24098150 PCT