Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04192 atgcaacgtcgcaatgacaccgactctaccatgccgccaccttcaaccattaacatggaacgtcaaagaaggtccaagatgactcaaatgttcactcagcttcgaaccactgtccccggtgtcttacctcaggctacaagagaagtgattataaataagacaattggttacattaaggagcttgagaagaagaaggaaagattggaagaattgaaagagtcaatgaaaggagcagaagggtcgaagcatgaatgtggtaacagtaggaagtgctctgtcacggttactgtctctgctaatgttgcattctttggtattcaatccctgcctcgacccggtttgacaacactgattctcaaggtcttctgcaactaccaagctgacattttggctgcaaatgtctcagttaataatggcaaattcatattagcaatcaccaccttgctgcaaaatgatcatcatggaaaagctgtcgttcagaatattaaaagagacattatgagtttgtaa 510 0.0 MQRRNDTDSTMPPPSTINMERQRRSKMTQMFTQLRTTVPGVLPQATREVIINKTIGYIKELEKKKERLEELKESMKGAEGSKHECGNSRKCSVTVTVSANVAFFGIQSLPRPGLTTLILKVFCNYQADILAANVSVNNGKFILAITTLLQNDHHGKAVVQNIKRDIMSL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04192 169 Coils Coil 51 81 - -
Pste6g04192 169 MobiDBLite consensus disorder prediction 1 22 - -
Pste6g04192 169 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 61 IPR011598 GO:0046983
Pste6g04192 169 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 163 - -
Pste6g04192 169 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 76 IPR036638 GO:0046983
Pste6g04192 169 SMART finulus 17 67 IPR011598 GO:0046983
Pste6g04192 169 Gene3D - 14 90 IPR036638 GO:0046983
Pste6g04192 169 Pfam Helix-loop-helix DNA-binding domain 19 62 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04192 3 69 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.286 1.73e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste6g04192 HLH 3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04192 6 31170481 31176480 Pste6g04192 6 31170481 31176480 ECH