Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04188 atggaaaccactgtcaacgaccgtcttcattttgggaagatgggatatggctgcaagcattacaggagaaggtgcaccattcgtgctccttgctgcaacgagatctactcatgccgtcactgtcataacgacgctgtgagcttgttgaagaatccccttgatcgccacgagctcgttcgccaacaagttcaacaagttgtctgttcagtttgtgacactgagcaacctgtagctcaagtttgcacaaactgtggtgtccagatgggagaatatttctgcaatatctgcaaattcttcgatgatgatacagagaagcaacagtttcattgtgatgattgcgggatctgcagggttggaggtcgagaaaattttttccactgcaagaaatgtgggtcatgttattcggttagtctgcgtgataatcatatgtgcgtggagaactccatgaggcatcactgtcccatttgttacgagtacctttttgattcattgaaagacactattgttatgaaatgtggtcacacaatgcaccaagaatgttactatgagatgataaagcatgacaaatattgttgtccaatatgctccaagtcggtgcttgacatgtctaggacgtggaagagaatcgacgaagagattgaagcaactgtcatgcccgaagattatcgaaacaggaagttattaggtaactataggttatcaggatatgttgaaatgatactgagtcctgctgtgcatttagctaagcatccacatatggaaagactaagaatgctccattgcaggtttggatactatgtaatgactgcaatgacacaaccgaagtttacttccatattctgggacaaaaatgcggtcattgcagatcatataatactcgtgccattgcgcctccaagtcttcctcaatgaccagattcttgtgatccaactgtccgttattatggagggctattga 957 0.0 METTVNDRLHFGKMGYGCKHYRRRCTIRAPCCNEIYSCRHCHNDAVSLLKNPLDRHELVRQQVQQVVCSVCDTEQPVAQVCTNCGVQMGEYFCNICKFFDDDTEKQQFHCDDCGICRVGGRENFFHCKKCGSCYSVSLRDNHMCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHQECYYEMIKHDKYCCPICSKSVLDMSRTWKRIDEEIEATVMPEDYRNRKLLGNYRLSGYVEMILSPAVHLAKHPHMERLRMLHCRFGYYVMTAMTQPKFTSIFWDKNAVIADHIILVPLRLQVFLNDQILVIQLSVIMEGY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04188 318 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Pste6g04188 318 SMART ring_2 153 195 IPR001841 -
Pste6g04188 318 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Pste6g04188 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 228 IPR013083 -
Pste6g04188 318 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 225 - -
Pste6g04188 318 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Pste6g04188 318 SUPERFAMILY RING/U-box 152 202 - -
Pste6g04188 318 Pfam Ring finger domain 152 195 IPR001841 -
Pste6g04188 318 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Pste6g04188 318 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Pste6g04188 318 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04188 Pste-Chr6 31147565 31150457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04188 2 225 C2H2 Transcription Factor Family AT3G18290 39.076 1.65e-45 163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04188 6 31147565 31150457 Pste6g04188 6 31147565 31150457 ECH
Pste6g04188 6 31147565 31150457 Pste2g02380 2 24022927 24026243 PCT