Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04185 atgggaagaccctccaaggcgcaggtttcgaacgactcatcctccgacgacgaggaggaggaggacgttgccgctgccaaccaccagatcgaggacgacgatgaagagctcgaagcggtggctcgctccggtagctccgacgacgacgataattcgccggaggaagccgccgaagacgacgacgaggacaaacaagatgagaacaatgttgatcctgaagttagcaagcgtgagaaggccaggttgagagaaatgcagcaactgaagaaacagaagattcaggatatattggatgctcaaaatgcgactattgatgctgatatgaataataaaggaaagggccgattgaagtatcttctacagcaaactgagctttttgctcattttgccaagggtgaccaatcttctcaaaagaaggcaaagggaaggggtcgccatgcatccaaagtcactgaagaagaggaagatgaagaataccttaaaggggaagaagatggtttggcaaacacaaggctggtgactcaaccatcatgtatccaaggaaagatgagggattaccaacttgctgggttaaactggctcattcgattgtatgagaacggtataaatggaattctggctgatgaaatgggtcttgggaaaaccttacaaacaatatcattgttgggctacttacatgagtttagaggaataacaggtcctcatatggtggttgcaccaaaatctactcttggaaattggatgaatgaaattcgacgcttttgccctgtattacgtgctataaagttccttggcaaccctgatgaaaggaagcacataagagaagagttacttgttgctggtaagtttgatgtgtgtgttactagttttgaaatggtaattaaggagaagtctgctttaaggagatttagttggcgctacataattattgatgaggcccatcgaatcaagaatgaaaactcactcctgtccaagacaatgcggctttacaatacaaactatcggctcctcattactggcaccccattacagaacaatcttcatgaactgtgggcacttctcaattttctattgcctgaaatatttagttctgctgaaacttttgatgaatggtttcaaatctctggtgaaaatgatgaacatgaggttgttcaacaactgcacaaggtccttcgtccatttctccttcggaggttgaagtcagatgttgaaaaagggttgccaccaaaaaaagaaaccattctcaaagtaggcatgtcgcaaatgcagaagcagtattacaaggcattactgcagaaggatctggaggttgtgaatgcaggtggtgaacggaaacgtctcctaaatatagcaatgcaactacgtaaatgttgcaatcacccatatctcttccaaggtgctgaacctggccctccctatacaacaggagaccatctcattacaaatgctggtaaaatggttctactggataagttacttcctaaactgaaagagcgtgattccagggtccttatattttcacagatgactaggctgctagacatacttgaagattatctcatgtttcgtggataccagtattgtcgcatagatggcaatactggtggagaagatcgggatgcttctattgaggcgttcaacaaaccaggaagtgaaaaatttgtgttcttgctatctactcgggctggaggccttggcattaatcttgctactgcagatgttgtcattctctatgacagtgactggaacccacaagttgacctgcaagctcaggaccgtgctcataggattggtcaaaagaaagaagttcaagtattccgattttgcactgagtatacaattgaggagaaggtcattgaaagggcttacaaaaagcttgcacttgatgctctggtgattcagcaagggcgactagctgaacacaaagctgttaataaagatgaactacttcaaatggttagatttggtgcggaaatggtttttagttccaaggacagtacaattacagatgaggatattgacagaataatcgctaaaggagaggaagcaacagctgaacttgatgctaagatgaaaaagtttactgaagatgctatcaaatttaagatggatgacattaccaacattgataattttcattttgtagctgctgagttgtatgattttgatgatgagaaggatgagaacaaatttgatttcaaaaaaattgtaagtgagaactgggttgagcctccaagaagagaacgaaagcgcaattactcggagtctgaatatttcaagcaaacaatgcgccaaggtggtcctgctaagccaaaagagccccgtattcctaggatgcctcaattgcacgatttccagtttttcaacacgcaaaggcttagtgagctatatgaaaaggaagttcgctacctcatgcaagcacatcagaagaatcaggtgaaagactccatagatgttgacgaaccagaagtctattctgtggtgaataagccacttaagaatgttttctgggttaaatgcttggaagaatgcagaggaatgaaagtagctaagaacatttacgaggccggagatccattgaccgcagaagaattggaagaaaaggaacagttgctagaggagggattttcatcgtggagccggaaggattttaatgctttcattagggcctgtgaaaagtatggccgaaatgatataagaagtattgcttctgagatggaaggcaaaacacaggaggaagttgaaagatatgcaaaagtcttcaaagaaagatacaaggaattaaatgactatgatagaattattaagaacatcgaaagaggggaggcgagaataacccgtaaagatgagatcatgaaagctattgggaagaagttggaccgctacaagaatccttggctggaattgaagatacaatatggacaaaacaagggaaagttatacaatgaagaatgtgatcgattcatgatatgtatgattcacaaacttggctacggtaattgggatgagttgaaggcagcttttcgaatgtcgcccttgtttcgatttgattggtttgtcaagtctcgcacaacacaggaaattacaaggaggtgtgacaccctcattcggctggtagagaaggaaaatcaagaacacgacgagagggagaggcaagctcgtaaagagaagaaacttgcggccaagagcatgaccccatcgaagcgttccacacctcgacagactgagagtccctctctgaagaagcggaagcagttaaccatggatgactatttaagctcgggagggaagaagaaaaaataa 3303 0.0 MGRPSKAQVSNDSSSDDEEEEDVAAANHQIEDDDEELEAVARSGSSDDDDNSPEEAAEDDDEDKQDENNVDPEVSKREKARLREMQQLKKQKIQDILDAQNATIDADMNNKGKGRLKYLLQQTELFAHFAKGDQSSQKKAKGRGRHASKVTEEEEDEEYLKGEEDGLANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEHEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEHKAVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDITNIDNFHFVAAELYDFDDEKDENKFDFKKIVSENWVEPPRRERKRNYSESEYFKQTMRQGGPAKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEVYSVVNKPLKNVFWVKCLEECRGMKVAKNIYEAGDPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIRSIASEMEGKTQEEVERYAKVFKERYKELNDYDRIIKNIERGEARITRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQEITRRCDTLIRLVEKENQEHDERERQARKEKKLAAKSMTPSKRSTPRQTESPSLKKRKQLTMDDYLSSGGKKKK 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04185 1100 CDD DEXHc_SMARCA1_SMARCA5 180 400 IPR044754 GO:0005524
Pste6g04185 1100 MobiDBLite consensus disorder prediction 14 38 - -
Pste6g04185 1100 Gene3D - 184 399 IPR038718 -
Pste6g04185 1100 SUPERFAMILY Homeodomain-like 930 1052 IPR009057 -
Pste6g04185 1100 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 875 929 - -
Pste6g04185 1100 MobiDBLite consensus disorder prediction 131 161 - -
Pste6g04185 1100 FunFam ISWI chromatin-remodeling complex ATPase CHR11 404 696 - -
Pste6g04185 1100 Coils Coil 1036 1059 - -
Pste6g04185 1100 Pfam SNF2-related domain 196 463 IPR000330 GO:0005524|GO:0140658
Pste6g04185 1100 Gene3D - 404 696 IPR027417 -
Pste6g04185 1100 FunFam ISWI chromatin-remodeling complex ATPase CHR11 745 835 - -
Pste6g04185 1100 Pfam SLIDE 932 1042 IPR015195 GO:0003677|GO:0005634|GO:0006338
Pste6g04185 1100 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 639 IPR001650 -
Pste6g04185 1100 MobiDBLite consensus disorder prediction 1043 1100 - -
Pste6g04185 1100 Gene3D - 963 1066 - -
Pste6g04185 1100 Gene3D iswi atpase 930 962 - -
Pste6g04185 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 398 IPR027417 -
Pste6g04185 1100 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 106 1083 - -
Pste6g04185 1100 Coils Coil 82 102 - -
Pste6g04185 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 681 IPR027417 -
Pste6g04185 1100 MobiDBLite consensus disorder prediction 1 82 - -
Pste6g04185 1100 Gene3D ISWI, HAND domain 745 874 IPR036306 GO:0003677|GO:0006338|GO:0031491
Pste6g04185 1100 SMART ultradead3 179 371 IPR014001 -
Pste6g04185 1100 SUPERFAMILY Homeodomain-like 878 928 IPR009057 -
Pste6g04185 1100 Gene3D - 875 929 - -
Pste6g04185 1100 SMART helicmild6 514 598 IPR001650 -
Pste6g04185 1100 FunFam Chromatin-remodeling complex ATPase 184 399 - -
Pste6g04185 1100 MobiDBLite consensus disorder prediction 134 155 - -
Pste6g04185 1100 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 360 IPR014001 -
Pste6g04185 1100 FunFam ISWI chromatin-remodeling complex ATPase CHR11 963 1067 - -
Pste6g04185 1100 ProSiteProfiles SANT domain profile. 874 926 IPR017884 -
Pste6g04185 1100 MobiDBLite consensus disorder prediction 50 68 - -
Pste6g04185 1100 SMART sant 875 924 IPR001005 -
Pste6g04185 1100 SMART sant 977 1038 IPR001005 -
Pste6g04185 1100 MobiDBLite consensus disorder prediction 1075 1100 - -
Pste6g04185 1100 MobiDBLite consensus disorder prediction 1043 1063 - -
Pste6g04185 1100 CDD SANT 878 922 IPR001005 -
Pste6g04185 1100 Pfam HAND 757 875 IPR015194 GO:0003677|GO:0006338|GO:0031491
Pste6g04185 1100 CDD SF2_C_SNF 484 609 - -
Pste6g04185 1100 Pfam Helicase conserved C-terminal domain 486 598 IPR001650 -
Pste6g04185 1100 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 756 877 IPR036306 GO:0003677|GO:0006338|GO:0031491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04185 Pste-Chr6 31110637 31120110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04185 204 625 RAD5 or RAD16-like Gene Family AT1G02670 27.525 7.64e-43 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste6g04185 SNF2_N 2.8e-72 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04185 6 31110637 31120110 Pste6g04185 6 31110637 31120110 ECH
Pste6g04185 6 31110637 31120110 Pste2g02377 2 23986040 24002203 PCT