Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04165 atgtcaacctctagaacatcagatacacccttcaaagtatatgaccccaaccaaactcaaatgtgtctctctctcctccaacgcaacacgtctccctgtggtgagagaaggggcagaaggaagcaagcagagccagggaggttccttggtgtgaggaggcgcccttggggtcgatatgctgctgaaattagagaccccacaaccaaagagaggcattggctgggcacatttgacactgctcaagaagcagctcttgcttatgacagagctgctctgtccatgaaaggaagccaagcaaggaccaactttgtttactctgacaacatcaacttccacaatctcctttctccagtggatgttcaagtccaagttcaacctctcttgccagcttcacagttcctcactaacaccactcagactcagactcagactcagactcaaaccaaacaagcaaccaaccgaaacagcctctctcatgttattcacacttcaaacaatggaaacccctccccattgaacaatggcatatgtgttgaaacctcgtatgggtcagctcaggatgacagtttcttcttttccagtgattctaactcaggctatctggagtgcatagttcctgataattgcttcagacctgcttcctccagtatcaacagttcaaattccagaaagagcaatgtgagttatcaaaaggctaacacaaactccacggagagtgtcaatcatcatgttgagatgacctcattctctcaagaaggcatagaaatggcaccaagggcctctaacttttcacagttttgttacccaagtgaagtgagtcaaggatcatgggattggaattgcagcgaactttcagcaatatttaagaacccaataagggtggaaaatgagtgcatggatacaatgtacccaatgagtgatagtcctagtccaagctatgggctaatgaatgaggctgcttcttctacaacctgttctccatcacttccaccctttggggacgtagacttgggatacccactcttctga 1029 0.0 MSTSRTSDTPFKVYDPNQTQMCLSLLQRNTSPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDNINFHNLLSPVDVQVQVQPLLPASQFLTNTTQTQTQTQTQTKQATNRNSLSHVIHTSNNGNPSPLNNGICVETSYGSAQDDSFFFSSDSNSGYLECIVPDNCFRPASSSINSSNSRKSNVSYQKANTNSTESVNHHVEMTSFSQEGIEMAPRASNFSQFCYPSEVSQGSWDWNCSELSAIFKNPIRVENECMDTMYPMSDSPSPSYGLMNEAASSTTCSPSLPPFGDVDLGYPLF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04165 342 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Pste6g04165 342 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Pste6g04165 342 FunFam Ethylene-responsive transcription factor 2 47 105 - -
Pste6g04165 342 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Pste6g04165 342 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Pste6g04165 342 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Pste6g04165 342 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 232 - -
Pste6g04165 342 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Pste6g04165 342 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Pste6g04165 342 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04165 Pste-Chr6 30966823 30968138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04165 1 221 AP2-EREBP Transcription Factor Family AT5G18560 48.846 1.94e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste6g04165 AP2 1.4e-12 CL0081