Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04164 atggaacggtacgggcgggccagcgaagggtcgcagtctgatccgtcgctggaatggaccggctccggcgccgacgctggcctcgaaggtgactctgactctatctgcattctctattattcccttggcgattttcgatttgcgcacaataatgtggagtgcggtaatggaagtaggtttgatcttgaattttcgtataatgcagagtcgtcgtggcaactcggattacccggggccgaatcgtaccctctgcgtcccgatgaggccgattgtatctactatttgaggacgggtttttgcggttacggcgcacgctgccgtttcaaccatcctcgtgaccgtgctgcggttattggagctgcggctaggactggaggcgagtttccagagcgcgtgggacagcctgtctgccagtactatatgaagactggggcgtgcaaatttggtgcatcctgcaagtaccaccatcctaggcaggcggcaggcactgctacccctgtgccactaaattattatggatatccattgagagtgggtgagaaagagtgttcctattatgtgaaaactggacagtgcaagtttggtgcaacttgtaaattccatcatccacagcctgcaggtgtccaagttctagctccatcaccagttcccccagtttctcctctgcctgtacctctaccttcaccaatgtatcaaactgtacagccgccaactggtccatcacaacaacaatatggtgtatttgttgcaaggcaacctatgctacctggctcagtagtccagggtccctatggccctatggtagtgtcccctgccatggtccctttttcgggctggggtccttatcaggctcctgcagcgaaccctctacttccatctagcacttcgtctaatgttggttcaacgcagctttatgggataacccagctaccttcatcagcagctacttatactggaccttatcaaccttctggttcgtcaattggtccttcaagtgctagtcagaaggagcatccatttcctgaaaggcctgatcaaccagaatgtcattattacatgaaaacaggggagtgtaaatttggtccatcttgtagatatcatcatccaccagacaagagtgcaccaaaagcaaatgtaatcctcagtcctgtgggtcttccactgcgtccgggggcaccaccttgcactcattatacccagcgtggagtttgcaagtttggttctgcatgcaaattcgaccatcctatgggatcgctgagttacagtccatctgcatcttccctggctgacatgccagttgcaccatatcctgtgggttcctcaattggtactcttgccccatcatcttcatcatcagagttgcggcctgaacttggtgcaggagctagtaaggagtctgtttcaacccgaatgtcttcaatgagcacatcaactggatcagttggcttgaccttgtcaagtgttggacccatttctcactcaagcactcaaccagctgctcagagttccagttcttcagcaactaccagtgctaccacaagtagcacagcctcttctcacacctcaagctaa 1572 0.0 MERYGRASEGSQSDPSLEWTGSGADAGLEGDSDSICILYYSLGDFRFAHNNVECGNGSRFDLEFSYNAESSWQLGLPGAESYPLRPDEADCIYYLRTGFCGYGARCRFNHPRDRAAVIGAAARTGGEFPERVGQPVCQYYMKTGACKFGASCKYHHPRQAAGTATPVPLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQVLAPSPVPPVSPLPVPLPSPMYQTVQPPTGPSQQQYGVFVARQPMLPGSVVQGPYGPMVVSPAMVPFSGWGPYQAPAANPLLPSSTSSNVGSTQLYGITQLPSSAATYTGPYQPSGSSIGPSSASQKEHPFPERPDQPECHYYMKTGECKFGPSCRYHHPPDKSAPKANVILSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGASKESVSTRMSSMSTSTGSVGLTLSSVGPISHSSTQPAAQSSSSSATTSATTSSTASSHTSS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04164 523 SUPERFAMILY CCCH zinc finger 393 419 IPR036855 GO:0046872
Pste6g04164 523 SUPERFAMILY CCCH zinc finger 178 205 IPR036855 GO:0046872
Pste6g04164 523 ProSiteProfiles Zinc finger C3H1-type profile. 177 205 IPR000571 GO:0046872
Pste6g04164 523 SUPERFAMILY CCCH zinc finger 346 372 IPR036855 GO:0046872
Pste6g04164 523 ProSiteProfiles Zinc finger C3H1-type profile. 85 113 IPR000571 GO:0046872
Pste6g04164 523 Gene3D - 85 164 - -
Pste6g04164 523 ProSiteProfiles Zinc finger C3H1-type profile. 389 417 IPR000571 GO:0046872
Pste6g04164 523 ProSiteProfiles Zinc finger C3H1-type profile. 131 159 IPR000571 GO:0046872
Pste6g04164 523 FunFam CCCH type zinc finger protein 341 426 - -
Pste6g04164 523 Gene3D - 342 420 - -
Pste6g04164 523 Gene3D - 165 214 - -
Pste6g04164 523 MobiDBLite consensus disorder prediction 465 523 - -
Pste6g04164 523 MobiDBLite consensus disorder prediction 316 334 - -
Pste6g04164 523 SMART c3hfinal6 85 112 IPR000571 GO:0046872
Pste6g04164 523 SMART c3hfinal6 389 416 IPR000571 GO:0046872
Pste6g04164 523 SMART c3hfinal6 343 370 IPR000571 GO:0046872
Pste6g04164 523 SMART c3hfinal6 179 204 IPR000571 GO:0046872
Pste6g04164 523 SMART c3hfinal6 131 158 IPR000571 GO:0046872
Pste6g04164 523 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 392 416 IPR000571 GO:0046872
Pste6g04164 523 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 345 370 IPR000571 GO:0046872
Pste6g04164 523 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 158 IPR000571 GO:0046872
Pste6g04164 523 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 180 204 IPR000571 GO:0046872
Pste6g04164 523 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 112 IPR000571 GO:0046872
Pste6g04164 523 MobiDBLite consensus disorder prediction 316 346 - -
Pste6g04164 523 SUPERFAMILY CCCH zinc finger 88 114 IPR036855 GO:0046872
Pste6g04164 523 ProSiteProfiles Zinc finger C3H1-type profile. 343 371 IPR000571 GO:0046872
Pste6g04164 523 MobiDBLite consensus disorder prediction 444 523 - -
Pste6g04164 523 MobiDBLite consensus disorder prediction 1 25 - -
Pste6g04164 523 PANTHER PROTEIN PHOSPHATASE RELATED 80 451 - -
Pste6g04164 523 FunFam Zinc finger nuclease 2 84 162 - -
Pste6g04164 523 SUPERFAMILY CCCH zinc finger 134 159 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04164 Pste-Chr6 30956793 30961834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04164 1 488 C2H2 Transcription Factor Family AT5G18550 51.992 5.29e-147 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste6g04164 zf-CCCH 1.8e-07 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04164 6 30956793 30961834 Pste2g02363 2 23821725 23830796 PCT