Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04153 atggtggataacgttggaggcagcagctcctgtaatggcggtgaaaacagggaacaggagcggttgttgccaatagccaatgttgggaggataatgaagcagatactgcctgggaatgcgaaaatctcgaaggagtcgaaggaaacaatgcaagagtgcgtgtcagagttcataagctttgtaaccagcgaggcatcagagaagtgcaggaaggaaaggaggaagacagtgaacggtgatgacatctgctgggccttggggtcgcttggtttcgatgactatgcagacccattgagaaggtttttgcacagatatagagaactagaagtagatagatctactaatcacccagaagatagcccctga 366 0.0 MVDNVGGSSSCNGGENREQERLLPIANVGRIMKQILPGNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYADPLRRFLHRYRELEVDRSTNHPEDSP 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04153 121 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Pste6g04153 121 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pste6g04153 121 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 112 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pste6g04153 121 SUPERFAMILY Histone-fold 19 114 IPR009072 GO:0046982
Pste6g04153 121 Gene3D Histone, subunit A 11 120 IPR009072 GO:0046982
Pste6g04153 121 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Pste6g04153 121 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Pste6g04153 121 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Pste6g04153 121 FunFam Nuclear transcription factor Y subunit B-6 12 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04153 Pste-Chr6 30837772 30838354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04153 17 121 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.560 2.71e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pste6g04153 CBFD_NFYB_HMF 1.8e-27 CL0012