Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04087 atgggattaatagacaatggcaaggaaatggaatcaaaagactacgcgctgagcggcaagataatggtgatcgcaatcgttgttctcttcattgtgataatcataatgctttgcctccacgtctacgtccggtggcgcctcgtaagcgctcgccgccggcaacaactccgccgcagtaaccggccgcagtttgtgttctacgtggaccccgcagcccgcattgcgctcaccaggcgcgagctccacccttccgtgatctccacgctcccggtgttcaccttctccgccgccacccaaacattagaatgcgcggtttgtttatcggagttcgagagcggggaaaccggtcgggtgctacctaaatgcaatcacagtttccatacgaagtgcatcgacatgtggtttcagtctcatgccacgtgtccgctttgcagggcgtccgtcgaggccataaccgaccgagaaatcccatccgatatggctgttgttgtgtctgggcccgaaacggttcgggaagaggtgaaccggtccgaagcgctgggttcttcttcttcttattcgtcgtcgtcgtgttctgaggtagttgagagctttgggcgtgaatcggggtcgtcgtttcgttctccggtgagtcgtatattgtcattaaagaggattctcagtagagagaagggaagcgtttcgggaggatgcagctccatgaccgagttagacgcagaacaaggaaacttgcacgactcggtgagttga 750 0.0 MGLIDNGKEMESKDYALSGKIMVIAIVVLFIVIIIMLCLHVYVRWRLVSARRRQQLRRSNRPQFVFYVDPAARIALTRRELHPSVISTLPVFTFSAATQTLECAVCLSEFESGETGRVLPKCNHSFHTKCIDMWFQSHATCPLCRASVEAITDREIPSDMAVVVSGPETVREEVNRSEALGSSSSYSSSSCSEVVESFGRESGSSFRSPVSRILSLKRILSREKGSVSGGCSSMTELDAEQGNLHDSVS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04087 249 Pfam Ring finger domain 102 145 IPR001841 -
Pste6g04087 249 CDD RING-H2_EL5-like 102 145 - -
Pste6g04087 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 151 IPR013083 -
Pste6g04087 249 MobiDBLite consensus disorder prediction 226 249 - -
Pste6g04087 249 SUPERFAMILY RING/U-box 99 152 - -
Pste6g04087 249 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Pste6g04087 249 FunFam E3 ubiquitin-protein ligase ATL6 70 151 - -
Pste6g04087 249 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 153 IPR044675 -
Pste6g04087 249 MobiDBLite consensus disorder prediction 222 249 - -
Pste6g04087 249 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04087 Pste-Chr6 30133174 30146276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04087 12 243 Rapid Response to Elicitors AT3G16720 40.000 3.22e-52 170
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04087 6 30133174 30146276 Pste6g04087 6 30133174 30146276 ECH
Pste6g04087 6 30133174 30146276 Pste2g03147 2 31387086 31387949 PCT