Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04084 atggcgactggattcgacagcgcccatgagaagaagaagaagctggcaatcctgagcgtgtcatcgctcctgctggtggcgatggtggccgcagtggcggtgggagtaagagatgggtcggagatcaaggaggatggcggggaagggatcgtgtcatctcaaaggaacgagcaagtgatatgcgaatcaacggagtacaaggaaacatgcaggaagagtctggagaaagcgtcgaacggcacgacggatctgaagcagctgatcataacagccttcaacgccacagcggaagagataataaacaaaatagacaactcgacgctgtacgaggaattggcgaaggacaacatgacaaagcaggcgatggatatttgcaaggaagtgctgggttacgccgtggacgacattcggcaatccgttaggacgttgcaccggtttgacataagcaagttgaacgactacgcctacgacctcaaggtttggatcgctggtactctggcccaccaacagacctgtttggatgggttcgagaacaccaccaccgatgctgggaaaaccatggccagggttcttaatgcttctctggagatgagcaacaacgccatggacatcgtgaacggtgtgtcgagtatattcaagggtcttaacttgagtgcattcactgccaccaacaggaagcttttgtcagatgatgggatcccttcctgggtgagtgaagggcagaggcggctactccaggctgctgaacccacacccaacgttgttgtggcccaggatgggagcggacatgttaagaccatccacgaggctcttaccatggtgcccaagaagaacaagcagcccttcgtcatttacatcaaggagggtgtttatcaggagtatcttaacttgaacaagcacctcacctacgtcaccttcatcggagatggccccaccaagactagaatcaccggcagcaagaactacgtggatggcatccaaacttacaacacagccaccgtgggtgttaacgctgcggacttcatggcgaagaacatagggttcgagaacacagcaggagcagagaagcaccaggcagtggcgctgagggtaacagcagacagggcggtgttctacaactgccaaatggacgggtaccaggacaccctgtacgtgcagtcgcagaggcagttctacagggactgcagggtgacggggacgatagacttcgtgttcggggacgcgatagcagtgttccagaactgcaagttgatagtgaggaagccgatggagaaccagcagtgcatggtgacagcaggtggaaggacaaaggtggacagcccaagcgctctggtgttccagagctgtaccttcaccggggagcccgacttggttgccatcaaccccaaaatctcctacctgggacgtccctggaggctttactccaaggttgtcatcatggactcccaaatcgatgacatctttcttccccaaggctacatggcttggatgggaactgctttcactgacaccagcacctattatgagttcaacaacagaggccccggtgcctccactgtcggcagaatcaactggcccggttttaaggtcatcaccccccttgaggcatccaattactaccccggcaagttctttgagatcgctaattccactcaacgtgattcttggatccttcaatctgggataccctattcccttggctccctttcttaa 1713 0.0 MATGFDSAHEKKKKLAILSVSSLLLVAMVAAVAVGVRDGSEIKEDGGEGIVSSQRNEQVICESTEYKETCRKSLEKASNGTTDLKQLIITAFNATAEEIINKIDNSTLYEELAKDNMTKQAMDICKEVLGYAVDDIRQSVRTLHRFDISKLNDYAYDLKVWIAGTLAHQQTCLDGFENTTTDAGKTMARVLNASLEMSNNAMDIVNGVSSIFKGLNLSAFTATNRKLLSDDGIPSWVSEGQRRLLQAAEPTPNVVVAQDGSGHVKTIHEALTMVPKKNKQPFVIYIKEGVYQEYLNLNKHLTYVTFIGDGPTKTRITGSKNYVDGIQTYNTATVGVNAADFMAKNIGFENTAGAEKHQAVALRVTADRAVFYNCQMDGYQDTLYVQSQRQFYRDCRVTGTIDFVFGDAIAVFQNCKLIVRKPMENQQCMVTAGGRTKVDSPSALVFQSCTFTGEPDLVAINPKISYLGRPWRLYSKVVIMDSQIDDIFLPQGYMAWMGTAFTDTSTYYEFNNRGPGASTVGRINWPGFKVITPLEASNYYPGKFFEIANSTQRDSWILQSGIPYSLGSLS 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04084 570 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Pste6g04084 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 207 IPR035513 -
Pste6g04084 570 FunFam Pectinesterase 53 209 - -
Pste6g04084 570 NCBIfam pectinesterase inhibitor domain 60 207 IPR006501 GO:0004857
Pste6g04084 570 SUPERFAMILY Pectin lyase-like 250 566 IPR011050 -
Pste6g04084 570 ProSitePatterns Pectinesterase signature 1. 278 297 IPR018040 -
Pste6g04084 570 SMART PMEI_2 52 204 IPR006501 GO:0004857
Pste6g04084 570 PANTHER PECTINESTERASE 19 557 - -
Pste6g04084 570 Pfam Pectinesterase 253 545 IPR000070 GO:0030599|GO:0042545
Pste6g04084 570 Gene3D - 251 569 IPR012334 -
Pste6g04084 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 208 IPR035513 -
Pste6g04084 570 FunFam Pectinesterase 4 250 568 - -
Pste6g04084 570 CDD PMEI-like_3 60 210 - -
Pste6g04084 570 Pfam Plant invertase/pectin methylesterase inhibitor 60 203 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04084 Pste-Chr6 30117721 30119739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04084 1 570 Carbohydrate Esterase AT3G05610 43.576 0.0 529