Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04071 atgggacaagaatcagactccaagaccaagttggtattagagatttgctccatttccgcgcgttctgtggcatgcgttcatacatatctctctaaactgccgaagccaacttttgttgactggtattgcattcttggagtggaagaaaatgcaagggtgaatgccattcgcaagaggtaccataaactggccttacaagttcacccagataagaataaacaccccaaagctgaaattgctttcaagctcgtttctgaggcatatgcatgtctatcaaatgcagcaaagagaaaagccttcgacttggacagatgtaagcatttctgctttgaatgcaaaagaattccctacacatctagcaatattcctggcaattcaagcggctcaggttttaaggcatggaatatcatcacgagatcaagatctttcaaactttggagaaatattagggacataagagaaaggttcatggacgaggcaaaggtgatagaaaattgtttgcgaacaaattctatgtcaaggaaagaatctccacttcacaatgacaatccagctggctttctacatagaagcaagtcactgcatagattcgagaaagaaaccccagtttttaatccgtcggactacttgtaccaaggctaccctcatctgaggagcaatatttacgacaattcttcaacattttggtacttgcagagaaatagtgcgcttcacaatgaaaagggaggagtgctgcacgcctcccctgtttttgaggttaaatcaaggagtttgtttgctagcagattcgcttttgtcccatcaaaatgctag 813 0.0 MGQESDSKTKLVLEICSISARSVACVHTYLSKLPKPTFVDWYCILGVEENARVNAIRKRYHKLALQVHPDKNKHPKAEIAFKLVSEAYACLSNAAKRKAFDLDRCKHFCFECKRIPYTSSNIPGNSSGSGFKAWNIITRSRSFKLWRNIRDIRERFMDEAKVIENCLRTNSMSRKESPLHNDNPAGFLHRSKSLHRFEKETPVFNPSDYLYQGYPHLRSNIYDNSSTFWYLQRNSALHNEKGGVLHASPVFEVKSRSLFASRFAFVPSKC 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04071 270 Pfam DnaJ domain 40 101 IPR001623 -
Pste6g04071 270 SUPERFAMILY Chaperone J-domain 31 102 IPR036869 -
Pste6g04071 270 ProSitePatterns Nt-dnaJ domain signature. 81 100 IPR018253 -
Pste6g04071 270 PRINTS DnaJ domain signature 42 60 IPR001623 -
Pste6g04071 270 PRINTS DnaJ domain signature 76 96 IPR001623 -
Pste6g04071 270 PRINTS DnaJ domain signature 60 75 IPR001623 -
Pste6g04071 270 Gene3D DnaJ domain 39 163 IPR036869 -
Pste6g04071 270 CDD DnaJ 40 93 IPR001623 -
Pste6g04071 270 FunFam Chaperone protein dnaJ 49 isoform A 39 162 - -
Pste6g04071 270 SMART dnaj_3 39 96 IPR001623 -
Pste6g04071 270 ProSiteProfiles dnaJ domain profile. 40 104 IPR001623 -
Pste6g04071 270 PANTHER BNAC03G44070D PROTEIN 12 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04071 Pste-Chr6 30004796 30006306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04071 23 103 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 37.500 2.71e-10 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04071 6 30004796 30006306 Pste6g04071 6 30004796 30006306 ECH
Pste6g04071 6 30004796 30006306 Pste2g03122 2 31134891 31136138 PCT