Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04067 atggcttcaacggacatcagaggcattttcacagctttcaatccctctctcgacttcttcgctatcaccgccggagacggtcgcgtcaagatatgggacacgctcaggggtcaggtcatgaccgacttcgccgatattacgtcaactcattcaactacttcacctgataaatccgttaacggccatctcgcgctagattatacttgcatcaactggttctccttcgaaagaaagaggaaaaggaagcatgtgtcctcgttgttagtgcttggaactggtagtggtgatgttttagcacttgatgtcgcagctggtcaattgagttggagaattactgactgtcatcctggaggtgtgagagcccttgcatcctcagcaaatgcgtcaagcatttacacggctggtgcagatgggatggtatgcgtgatagatttcatgacaggaaaactgttggagaaatttaaagtttctactaaggcggtatcctgcatgtctgtttctccagatgggaagacattagctactgcagcagcacaattgaagatttttaactgttctagtcacaaaaaacttcaaaagttctctggtcatcctggatctgttcgatgcatggttttcactgaagatggcaagtatgtcctctcatctgcagttggtgaaagatatgttgctatttggaggatagatggtgctaaaaagcaatcagctagttgtgttcttgcaatggagcaccctgctgtctttcttgatagcagtattgaagaactgcgtaaagcaaaacccacgaaaatatcattatctttagaagacatgccttccagaaattacaagggagctctgcctgcaatatttgctgcaaaattacaaggcatccagaagccagcctccgggcaagtttttcttgtttatgggttgcttgtaaaaccatcatttagaaaagttctagtgcattctggtactgacataaagttgaatgtctcctatgatggtgttctacttccaatgaatcgatctcttgtcaaatctaagaaggggacaaatgcacaaacagttactgcactagaccgagctaatgccaaggatgccttgcttccaattcctaaggtttttgattctcatgtgaaggagaaagcatttcaaaaatctttggacgaggatgtcattggtgatttgcatagaagtagtaaagatgattccattgagatagaagatgatatggcccaaagtgagagtggtgtaatttgcctggaggaccggctaaaatcactagcgatgctttccagtgaaagtgactatgcatcaaacatggaactttgctctacgttgttgaagggtattgatctggaagctactgttccagtgaaaaagataagagcagctgttttgtctatggagccaagtgaagcattcaagctactggaagcattactggctgcatggaaatcaagggaaagtcctggtgcaacagtaaagttgtgcttgttgactgattggtcatgggttagaatccaaaaacagtttctttgcatatgcaaggttgtgcattgttttattgcattaagttattctaggagtaatgttaagggtagcataggatgtcaagttccttccccaagtaaaaatggaaagccaatgtcatctagtggaaagtatattcttccatggatctacagcatatcagtgaatcacagtgacaatatcattgctcaggaatctttgacacatacacttgattccttagacaagatttccaaatttagaggggcaactcatcagtctttgttgcaattatcaggtcgtctgcaactggtgacatcacagattgacaaggcattggcaactgagactagaagggtgcaagaactccaagcagaagaaagtgaagatgaagataaagatgaatattatcacgaggaagatgatgcttctgaaataagtactgatgatgaaagctag 1956 0.0 MASTDIRGIFTAFNPSLDFFAITAGDGRVKIWDTLRGQVMTDFADITSTHSTTSPDKSVNGHLALDYTCINWFSFERKRKRKHVSSLLVLGTGSGDVLALDVAAGQLSWRITDCHPGGVRALASSANASSIYTAGADGMVCVIDFMTGKLLEKFKVSTKAVSCMSVSPDGKTLATAAAQLKIFNCSSHKKLQKFSGHPGSVRCMVFTEDGKYVLSSAVGERYVAIWRIDGAKKQSASCVLAMEHPAVFLDSSIEELRKAKPTKISLSLEDMPSRNYKGALPAIFAAKLQGIQKPASGQVFLVYGLLVKPSFRKVLVHSGTDIKLNVSYDGVLLPMNRSLVKSKKGTNAQTVTALDRANAKDALLPIPKVFDSHVKEKAFQKSLDEDVIGDLHRSSKDDSIEIEDDMAQSESGVICLEDRLKSLAMLSSESDYASNMELCSTLLKGIDLEATVPVKKIRAAVLSMEPSEAFKLLEALLAAWKSRESPGATVKLCLLTDWSWVRIQKQFLCICKVVHCFIALSYSRSNVKGSIGCQVPSPSKNGKPMSSSGKYILPWIYSISVNHSDNIIAQESLTHTLDSLDKISKFRGATHQSLLQLSGRLQLVTSQIDKALATETRRVQELQAEESEDEDKDEYYHEEDDASEISTDDES 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04067 651 PANTHER OS03G0300300 PROTEIN 546 650 - -
Pste6g04067 651 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Pste6g04067 651 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
Pste6g04067 651 MobiDBLite consensus disorder prediction 626 651 - -
Pste6g04067 651 Coils Coil 612 632 - -
Pste6g04067 651 SMART WD40_4 3 33 IPR001680 GO:0005515
Pste6g04067 651 SMART WD40_4 147 184 IPR001680 GO:0005515
Pste6g04067 651 SMART WD40_4 104 144 IPR001680 GO:0005515
Pste6g04067 651 SMART WD40_4 187 227 IPR001680 GO:0005515
Pste6g04067 651 Gene3D - 9 142 IPR015943 GO:0005515
Pste6g04067 651 Gene3D - 143 248 IPR015943 GO:0005515
Pste6g04067 651 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 231 IPR011047 -
Pste6g04067 651 MobiDBLite consensus disorder prediction 618 651 - -
Pste6g04067 651 Pfam WD domain, G-beta repeat 190 226 IPR001680 GO:0005515
Pste6g04067 651 Pfam WD domain, G-beta repeat 12 33 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04067 115 228 U-box Gene Family AT2G33340 29.661 1.76e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04067 6 29952575 29962824 Pste6g04067 6 29952575 29962824 ECH