Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04048 atgaatcttagcaacggtaagggatccatgtcaacgattactacaagcgccgctattaaatccgccgacgccgtctccgaccagtttccggccggtctccgggttctcgtcgtcgacgatgatcccacgtgcctcgtgattctggagaagatgctccgcacgtgcctctacgaggttaccaaatgtaatagagcagaaactgctctctcactgcttagggagaacaagaatggctttgacattgttataagtgatgtgcatatgccggacatggatggatttaaacttttggaacacattggtttggagatggatcttccagttataatgatgtctgcggatgatggtaaaaatgttgttatgaaaggtgtgactcacggtgcttgtgattacctaattaagcctgttcgcattgaggctttgaagaacatatggcaacacgtggttcgtaagaggaagaatgagtggaaagatgccgagcaatcaggtagtgccgaggaaggagatcggcaaccaaaggcatctgatgaagcagattactcttcctcagcgaatgaaggcagttggagaaactcaaagaagagaagggatgaggaagaggaggcagaggagagagatgacacatccacattaaagaagccaagggttgtttggtctgtggagcttcatcaacagtttgtcgctgctgtggaccaactgggaattgacaaggctgttcctaaaaaaattctggaattgatgaatgttcctgggctaactagagaaaatgttgccagccacctgcagaaataccgattatatcttcgaagattgagtggagtttctcagcaccagaataacttgaacaactcctttctcgcgccccaagagacaacatttgggacaatttcttcaattaatgggattgatcttcaaactcttgctgttgctggccagcttcctgcacaaagtctagccacacttcaagcagcaggacttggaagatcaaatgcaaaatctggtgtaccgatgcctctcatggatcaaagaaaccttttcagttttgaaaatccaaggttaagatttggagaaggccaacagcaacatttaagcagtagtaaaccaatgaacttattgcatggaatccctacaaacatggagccaaagcagctggccaatttgcaccagtctaaccaatccctcggcagcttgaacatgcgagtcaactcatctgctacacaaggcaatcccttattgatgcagatggcacaatctcaacctagaggtcaaatgctaggtgaaaatattggccctcgtgttccaagacttccatcgtctttgggacaacccaatgtatcaaatggaatttctaatggtcttttgggcagaaatgggattgctggtaataacaggggaccgatgtataatcctgttccaccgggctcttccttgttgagttttcccatgaatcaaacctctgaaatgtctgtgaacaatagtttcccacttggaagcactccaggtatgtccagtatcacaacaaaaggctcattccaagaggaagtaacatcaggaatcaaaggatctggcggatttccaagctacgatatttttaatgaactgcaccatcagaagtcgcatgattgggagataacaaacccaggccttacttacaatgccccccaccatgcaaatcctttacaaggtaacattgatgtctcaccatcagttttagtgcaccagggcttttcttctacacagcagactggccaaagcagagatgctgctttgattggaaaggcaatgttctccgttggagaaggcttggaacaagataatctccaaaatacgggtcaacacctcaatgcgcttcttgttgacaattcaataagggtcaaatctgaaagaattcctgatgcaagctcccagactaacctcttccctgaccattatgggcaggaggatctgatgagtgcacttctaaagcagcaagaaggcatgggaccggctgagaatgagtttgaatttgatggatattctctggacaacattcctgtctag 2040 0.0 MNLSNGKGSMSTITTSAAIKSADAVSDQFPAGLRVLVVDDDPTCLVILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAEERDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFLAPQETTFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSNAKSGVPMPLMDQRNLFSFENPRLRFGEGQQQHLSSSKPMNLLHGIPTNMEPKQLANLHQSNQSLGSLNMRVNSSATQGNPLLMQMAQSQPRGQMLGENIGPRVPRLPSSLGQPNVSNGISNGLLGRNGIAGNNRGPMYNPVPPGSSLLSFPMNQTSEMSVNNSFPLGSTPGMSSITTKGSFQEEVTSGIKGSGGFPSYDIFNELHHQKSHDWEITNPGLTYNAPHHANPLQGNIDVSPSVLVHQGFSSTQQTGQSRDAALIGKAMFSVGEGLEQDNLQNTGQHLNALLVDNSIRVKSERIPDASSQTNLFPDHYGQEDLMSALLKQQEGMGPAENEFEFDGYSLDNIPV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04048 679 PIRSF RR_ARR_type-B 9 671 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pste6g04048 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Pste6g04048 679 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Pste6g04048 679 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Pste6g04048 679 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Pste6g04048 679 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Pste6g04048 679 CDD REC_typeB_ARR-like 35 149 - -
Pste6g04048 679 MobiDBLite consensus disorder prediction 189 210 - -
Pste6g04048 679 FunFam Two-component response regulator 209 272 - -
Pste6g04048 679 Gene3D - 33 169 - -
Pste6g04048 679 MobiDBLite consensus disorder prediction 155 210 - -
Pste6g04048 679 Gene3D - 210 272 - -
Pste6g04048 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 338 IPR045279 GO:0009736
Pste6g04048 679 FunFam Two-component response regulator 33 170 - -
Pste6g04048 679 SUPERFAMILY CheY-like 32 156 IPR011006 -
Pste6g04048 679 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Pste6g04048 679 SMART REC_2 33 145 IPR001789 GO:0000160
Pste6g04048 679 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04048 Pste-Chr6 29777890 29786188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04048 68 679 Response Regulator Gene Family AT3G16857 50.229 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pste6g04048 Response_reg 2.5e-22 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04048 6 29777890 29786188 Pste6g04048 6 29777890 29786188 ECH
Pste6g04048 6 29777890 29786188 Pste2g03101 2 30954808 30958292 PCT