Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04047 atggtcacccgaaccccaaccctaagcatcctcgccgcgttagcaatcttcctggcaacgacgtcgttcgccgacgcgcaatcatgcaacggcatcctcgtctcctacgcctacaccggcggcttgcgactgccgccgaatgtctccgacgccgccaagcagccgtaccggttcgagtcaactctgactgtcctcaacaacggcctcgatgagctcaagtcgtggaaggtcttcgtcggcttcgaccacgacgagctgttggtctctgcttccaatgcagttctcgctgacggcaccaccctccccgcctccgtcggaaacggcaccgtcttcgccggataccccatgaccgatctcaagaccgccgtcgaaaccgccggcgacttgacccagatgcaggttcagatcaacctcctcggcaccgtcttcggtgttgcccctcccactgttcccatgcccaaatccatcaacctcgccaatgatggattcctctgtcgcaaatccaactcacaagggaagaatgcgagtagtgtgtgttgcacgagagatcccaagttcaaaactaacattactacggatgaagagtttctgccacgtcagaatggtgatctttctatcatgtatgatgtgatcagaacttatgattccaattactgggctgaggttactattgcaaaccataacccacttgggaggcttgacaactggaggttgagctgggactggatgaacgatgagtttatatacaccatgaaaggggcttatcctgctgttgtggatgcttctgattgtttgtttgggaagcaaggtacattctatagggatcttgactttgccaatgtgttgaattgtgagagaaggccaaccataattgatcttcctcccaccaagttcaatgattctgaccttgggaagattcccttttgctgccggaatggtactattttgcccccatccatggatcctagcatgtcagcttcgagattccagatgcaggtcttcaagatgccacccgcacttaaccgctcccttcttttaccaccacagaactggcagataagtggcacactcaaccctgactacaaatgtggcgctcctgttcgagtgagtcctagtgaaaatcctgatccatccggcttacccttgaacaaaactgtcatagccagttggcaggttgtgtgcaacataacaaccgccaagggaacgtcgaataaatgttgtgtctcattttcggcctattacaatgattcagttattccatgcaaaacatgtgcctgtggatgccccaagaagacagagagaacatgtagcgctactgctccagctatgtggcttccaccagaggcacttcttgttccttttgagaatagaaccgccaaggctgttgcttgggctagcctgaaacatttccaggtgccaaacccgttgccgtgtagcgataactgtggtgttagcatcaactggcatttgtacacggactacactaaaggatggagtgcaagggtgacactttttaactggggtgagactagttttgcagactggtttaccgctgtacaaatggacaaagcagctgctggttttgagaaaatgtattcattcaatgcgactctgctagatggtgtaaacaatacaatcataatgcaaggtttgccaggattgaactaccttgttgcagaaactgatggagctgaccctcttagagatccaagggtgcctggtaaacaacaatcagtgatttcattcacaaagaaaaccactcctggaatcaatatggctcgaggagatgggtttcccactaaagtctttttcaatggggaggaatgctctcttccttcagtgtatccaaccagcagtggtttcaggaatggtttttccttcgctacttccatgcttctaacgatgttgctgatcctcttgatgcggtaa 1929 0.0 MVTRTPTLSILAALAIFLATTSFADAQSCNGILVSYAYTGGLRLPPNVSDAAKQPYRFESTLTVLNNGLDELKSWKVFVGFDHDELLVSASNAVLADGTTLPASVGNGTVFAGYPMTDLKTAVETAGDLTQMQVQINLLGTVFGVAPPTVPMPKSINLANDGFLCRKSNSQGKNASSVCCTRDPKFKTNITTDEEFLPRQNGDLSIMYDVIRTYDSNYWAEVTIANHNPLGRLDNWRLSWDWMNDEFIYTMKGAYPAVVDASDCLFGKQGTFYRDLDFANVLNCERRPTIIDLPPTKFNDSDLGKIPFCCRNGTILPPSMDPSMSASRFQMQVFKMPPALNRSLLLPPQNWQISGTLNPDYKCGAPVRVSPSENPDPSGLPLNKTVIASWQVVCNITTAKGTSNKCCVSFSAYYNDSVIPCKTCACGCPKKTERTCSATAPAMWLPPEALLVPFENRTAKAVAWASLKHFQVPNPLPCSDNCGVSINWHLYTDYTKGWSARVTLFNWGETSFADWFTAVQMDKAAAGFEKMYSFNATLLDGVNNTIIMQGLPGLNYLVAETDGADPLRDPRVPGKQQSVISFTKKTTPGINMARGDGFPTKVFFNGEECSLPSVYPTSSGFRNGFSFATSMLLTMLLILLMR 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04047 642 Pfam COBRA-like protein 218 397 IPR006918 GO:0010215|GO:0016020
Pste6g04047 642 PANTHER COBRA-LIKE PROTEIN 7 23 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04047 Pste-Chr6 29769353 29771767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04047 29 619 COBRA Gene Family AT4G16120 69.529 0.0 882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04047 6 29769353 29771767 Pste6g04047 6 29769353 29771767 ECH
Pste6g04047 6 29769353 29771767 Pste2g03100 2 30950889 30953534 PCT