Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04043 atggtggattcaactggaaaaggatcggaggtggaggactcaaaccctaacgctcctttctcggggaacagtcccagcagcaacaatgagcagaagaaaacctgcgccgattgcggcaccaccaagacccctctctggaggggtggtcctgctggacctaagtctctctgcaacgcttgcgggatcagaagccggaagaagaagagagccattttggggatcagcaaggggtccaacgacgacggcaggaagggaaagcgggccgccgccaccgctcccggtggaatcagcggcgccgctttgaggaaggaaatgttgttgcaccgatcgcattggaagaagctcggagaggaagaaaaagctgccgtcttgctcatgtctctctcttatggatctgtctatgcctga 408 0.0 MVDSTGKGSEVEDSNPNAPFSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGSNDDGRKGKRAAATAPGGISGAALRKEMLLHRSHWKKLGEEEKAAVLLMSLSYGSVYA 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04043 135 MobiDBLite consensus disorder prediction 1 53 - -
Pste6g04043 135 ProSitePatterns GATA-type zinc finger domain. 35 60 IPR000679 GO:0006355|GO:0043565
Pste6g04043 135 Gene3D - 29 91 IPR013088 GO:0006355|GO:0008270
Pste6g04043 135 MobiDBLite consensus disorder prediction 1 38 - -
Pste6g04043 135 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 29 69 - -
Pste6g04043 135 SMART GATA_3 29 83 IPR000679 GO:0006355|GO:0043565
Pste6g04043 135 ProSiteProfiles GATA-type zinc finger domain profile. 29 65 IPR000679 GO:0006355|GO:0043565
Pste6g04043 135 CDD ZnF_GATA 34 87 IPR000679 GO:0006355|GO:0043565
Pste6g04043 135 Pfam GATA zinc finger 35 69 IPR000679 GO:0006355|GO:0043565
Pste6g04043 135 PANTHER OS01G0976800 PROTEIN 9 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04043 Pste-Chr6 29736703 29737700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04043 1 135 C2C2-Gata Transcription Factor Family AT5G49300 46.853 5.15e-36 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste6g04043 GATA 5.7e-17 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04043 6 29736703 29737700 Pste6g04043 6 29736703 29737700 ECH