Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04040 atgaagctatttggtttccccttgaagagttccatcagtagtgaggacatactttgtgacgatggtggaaagaggtttaagtgccgatactgtcgtcgccaatttggcaattctcaagcactaggtggccaccaaaatgcacacaggagagaacgtgctaagcttgctcagttcaaatatcttctccgtcttcaacagcatgaccaaaggttcaaagcagcatcaaatggagcaaaaggtccatcaggaacttcaattcatccaaatgggtcacctaacgttactgttgctagtgcaaatactgctcctggtgcagctttgtttcaatttcatcatagtgcagcttcatcactgctcctgcaagtaccagctggtgccaatcatgtggatctcaacctcagactagcttgctcctcagacaactcatga 429 0.0 MKLFGFPLKSSISSEDILCDDGGKRFKCRYCRRQFGNSQALGGHQNAHRRERAKLAQFKYLLRLQQHDQRFKAASNGAKGPSGTSIHPNGSPNVTVASANTAPGAALFQFHHSAASSLLLQVPAGANHVDLNLRLACSSDNS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04040 142 Gene3D Classic Zinc Finger 8 81 - -
Pste6g04040 142 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Pste6g04040 142 PANTHER ZINC FINGER PROTEIN 5 17 108 IPR044299 GO:0010090
Pste6g04040 142 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Pste6g04040 142 SUPERFAMILY beta-beta-alpha zinc fingers 22 53 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04040 Pste-Chr6 29696699 29697908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04040 1 58 C2H2 Transcription Factor Family AT5G06650 46.377 5.60e-13 61.2