Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g04024 atggcgaataagttagcggtgcaactggttggttcagagatacatggattccacacattgcaagatttggatgtggagagcattatggtggaagcaagaaccagatggctccgtcctaatgagattcatgccatgctttgtggtactattgtcttatttgatcgaaaaatgctcaggaacttccggaaagatgggcacaactggaaaaagaaaaaagatgggaaaactgttaaagaagctcacgagcacttaaaagttggtaatgaagaaaggatccatgtatattatgcacatggtcaggataaccctaattttgtccgaagatgttattggctgcttgacaagagaatggaacacatagtccttgttcattaccgcgaaatacaggagatgcaaggttctcctgtcactcctgtaaattcacattccagttctgtctctgatcctcctgcaccatggattttatcagaagaaatagattcagggactacagctactacatatgctggtgacacaagtgacaatataaaagtcaagagtcatgaaatgagacttcatgagattaatacacttgaatgggatgacctagtggatgcaaatgatcatagtgcccttaccgtggctaatggaggcactgttccatattttgatcaacaagatcaaattttactgaatggcagttttagcaatgtacccagcaatccatctgcagaaattccttcttttaatagtcttactcagccaattgctgggagtaacagtgttccttacaatttttcagaaagtgttaatgttcagatgatggacaatcaagcaaatccaaatgaacagaggaataatactgtttctttaagtggtggtgttgattccttggatgctttggtcaatggtagattgcacagtcaggacagctttggaatgtgggtgaaccacatcatctctgattcaccatgttcagtagatgaaccatctgttgaatcacctggttcatccgttcatgaaccatattcatctctggtagtgaatgatcagcaattttccctgccagaacaagtatttactctcactgatgtatcccctacatgggtatcttctaccgagaaatcaaaggttctggtgactggattctttcataaggactatttgcacctttcaaagtccaatctcttatgtgtctgtgatgatgttagcgttcctgcagaaattgttcaggatggggtctaccggtgctgggtatcaccacattctccaggatttgtgaatctcttcttgagctttgatggtcataagcctattagccaagttgttggttttgaatatcgtactcctgttttgcatgatcatgcagtttcaatggaaaagaatgacaactgggatgagtttcgactacaaatgaggcttgcttatttgctctttgctaaacaactgagccttgatgttatctccagtaaagtatcacctaataaacttaaggaagctaggcaattcgccctcaaaacatcatttatttccaatagttggcaatacttaatcaagtcaactgaagacaaccaaattccattttcacaagcaaaagatgctctatttggaattgcattgaaaaacagactaaaggaatggcttttggaaagaattgttttaggctgcttgtcattggatttccgtgatagatttggatggacagctcttcattgggcagcatattgtggaagggaaaaaatggttgcaaatctgttatctgctggagcaagggcaaatttggtcactgatcctacttcacaaaatcctggtggatgcactgctgctgaccttgcttatatgagaggccatgatggcttagccgcttatctttcagaaaaatccctggttcagcacttcaatgacatgagcttagctggaaatatcagtggctcactggaaactagcacaactaatccagtaaattctgcaaaccttactgatgaccagcagaacctgaaggatacattggcagcttgcagaactgctgctgaggcagcttcccgaataactgctgcttttagggagcactctctaaaactgagaactaaggcagttgtgtcttccagtccagaggctgaagcacgtaaaatagttgcagcaatgaagattcagcatgcatttaggaactatgagacaaagaaaactatggcagcggctgctcgcattcagtgtacattccgtacatggaagattcgtaaagaatttctctacatgcgccgtcaggctgttaaaattcaatctgctttcaggtgctttcaagtgcgaaagcattatcgcaaaattctttggtcagtgggtgtggtagagaaagcagtgctgcgatggcgtttgaagagaaggggcttccgtgggctccaggtcaaaactgttgaaatggaaactggagatcaggatcagcaaggtgatgttgtagaggaggaattctttcggactggtagaaaacaagctgaagaacgtgttgggcgatcagtagtgcgtgtgcaggctatgtttcgttcgaagaaagcacaagaagagtacaggaggatgaaattggcccttgatcaagcaaaggaatggtag 2583 0.0 MANKLAVQLVGSEIHGFHTLQDLDVESIMVEARTRWLRPNEIHAMLCGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKRMEHIVLVHYREIQEMQGSPVTPVNSHSSSVSDPPAPWILSEEIDSGTTATTYAGDTSDNIKVKSHEMRLHEINTLEWDDLVDANDHSALTVANGGTVPYFDQQDQILLNGSFSNVPSNPSAEIPSFNSLTQPIAGSNSVPYNFSESVNVQMMDNQANPNEQRNNTVSLSGGVDSLDALVNGRLHSQDSFGMWVNHIISDSPCSVDEPSVESPGSSVHEPYSSLVVNDQQFSLPEQVFTLTDVSPTWVSSTEKSKVLVTGFFHKDYLHLSKSNLLCVCDDVSVPAEIVQDGVYRCWVSPHSPGFVNLFLSFDGHKPISQVVGFEYRTPVLHDHAVSMEKNDNWDEFRLQMRLAYLLFAKQLSLDVISSKVSPNKLKEARQFALKTSFISNSWQYLIKSTEDNQIPFSQAKDALFGIALKNRLKEWLLERIVLGCLSLDFRDRFGWTALHWAAYCGREKMVANLLSAGARANLVTDPTSQNPGGCTAADLAYMRGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTTNPVNSANLTDDQQNLKDTLAACRTAAEAASRITAAFREHSLKLRTKAVVSSSPEAEARKIVAAMKIQHAFRNYETKKTMAAAARIQCTFRTWKIRKEFLYMRRQAVKIQSAFRCFQVRKHYRKILWSVGVVEKAVLRWRLKRRGFRGLQVKTVEMETGDQDQQGDVVEEEFFRTGRKQAEERVGRSVVRVQAMFRSKKAQEEYRRMKLALDQAKEW 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g04024 860 Pfam CG-1 domain 47 127 IPR005559 GO:0003677
Pste6g04024 860 Gene3D - 719 769 - -
Pste6g04024 860 ProSiteProfiles CG-1 DNA-binding domain profile. 25 134 IPR005559 GO:0003677
Pste6g04024 860 ProSiteProfiles IQ motif profile. 745 769 IPR000048 GO:0005515
Pste6g04024 860 Pfam IQ calmodulin-binding motif 747 766 IPR000048 GO:0005515
Pste6g04024 860 Pfam IQ calmodulin-binding motif 724 742 IPR000048 GO:0005515
Pste6g04024 860 SMART CG_1_2 28 129 IPR005559 GO:0003677
Pste6g04024 860 ProSiteProfiles Ankyrin repeat profile. 558 590 IPR002110 GO:0005515
Pste6g04024 860 SMART ANK_2a 558 587 IPR002110 GO:0005515
Pste6g04024 860 SMART ANK_2a 597 626 IPR002110 GO:0005515
Pste6g04024 860 ProSiteProfiles IQ motif profile. 829 856 IPR000048 GO:0005515
Pste6g04024 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 698 772 IPR027417 -
Pste6g04024 860 SUPERFAMILY E set domains 354 441 IPR014756 -
Pste6g04024 860 SUPERFAMILY Ankyrin repeat 549 622 IPR036770 -
Pste6g04024 860 ProSiteProfiles IQ motif profile. 722 751 IPR000048 GO:0005515
Pste6g04024 860 ProSiteProfiles Ankyrin repeat region circular profile. 558 586 - -
Pste6g04024 860 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 546 - -
Pste6g04024 860 Gene3D - 499 628 IPR036770 -
Pste6g04024 860 SMART iq_5 826 848 IPR000048 GO:0005515
Pste6g04024 860 SMART iq_5 721 743 IPR000048 GO:0005515
Pste6g04024 860 SMART iq_5 744 766 IPR000048 GO:0005515
Pste6g04024 860 Gene3D Immunoglobulins 348 444 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g04024 Pste-Chr6 29507135 29516861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g04024 28 858 CAMTA Transcription Factor Family AT3G16940 50.508 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pste6g04024 CG-1 4.6e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g04024 6 29507135 29516861 Pste6g04024 6 29507135 29516861 ECH
Pste6g04024 6 29507135 29516861 Pste2g03079 2 30737262 30739116 PCT