LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g04000	atggtggatgcctctctaggagaaataatgacaacatgtgagaagatcaattggctactgtcagagggtgagcagtggttaaagcctgaataccggtcttctggaagatcaatgcttcataaaagagctaaagtagaatttcatccccttggtgttattggagccatcgtttcatggaattatcctttccacaatatttttaatcccatgctggtagcaattttttctggaaatggtattgtgattaaggtatcagaacatgcaagttggtctggatgcttttacttccggatcatccaatcagcccttgctgccataggagctccagaggaccttgttgaagtgataacagggtttgctgaaacaggagaagcattagtatcttctgttgataaagtcatatttgttggatctcctggtgttggtaagatgataatgaataatgctgctaacacacttataccagtgacattggagcttggtgggaaagatgcatttattgtttgtgaagacgtagatctggaccacgttgcacaaattgctgttagggctgttcttcagtcaagtggacagaactgtgctggggcagagcgattttatgtccacagggaaatttattcttcttttgttagtaaagttaccaaaattgttaagtccgttacagctggcccaccacttgttggaaagtatgatatgggagctttatgcatgcatgagcattctgaaaagctttcagggcttataaatgatgctttagacaaaggagctgaaattgttgcccgtgggagtcttggacatataggtgaagacgcagttgatcaatattttccccctactgtgattatgaatgtgaaccactctatgaggttaatgcaagaagagagcgagttgatctcgctttgcccgttcctctctcggcaagaatatctctgtccgtcgccagtcgtcgtcattgtctccagcgaccccatatctagagcatctcttcgagcgacacctaaccatacctgtcgcaaaggcaaacttcgccgcacgggcctcgacgtgcagcttttttgcgtggcactctccggcgtgcgttgtccacgtgtcgccttccggtcatcggagcaccttcgcgccattgccgggttagacaaactatctgcctgggccatcaaatgtgctttcctgggttattctcgtgtccaaaaaggatacctcaagaaggctccaagacaaggattgccatatgaagacaaaggaaatgtgcaaatatctagatattatgattctgattatgtaggatctcttacaaacaggcattccacttctggatattgtgttttcattggaggcaacactatttcttggaaaagtaagaaacgggatgtggttgttcggtctagtgttgaagctgagtataggacaatcacgtttctcacttgtgaacttatatggataaaacaattcctccaagagctgaaattttgtgaaattcagcaaatgaagatgtattgtgataaccaggcagtcatgcacattgcttgcaatcctgtattccatgagagaaccaaacacattgaagttgattgtcattttatccgagagaaggcatttggaccaataatgccgataatgaaattcagctctgatgaggaggttgtcaggcttgcaaatgactcaaaatatggacttggctgtgctgttttctcaggcaatcagagccgtgccagagagatagcttcccagatacatactggggtagctgcagttaatgattttgcatcaacatacatgtgtcagtctctgccatttgggggtgtgaaacatagtggatttggacgatttggtggtgtagaaggtttgcgagcttgctgtcttgttaaagcagtcgttgaagatcgatggtggccattcatcaaaaccaagatacccaagcctattcagtatcctgttgcagagaatggattcgaatttcaggagtcacttgttgaagcactttacggtctcggcatatgggaccgtttgcgagcattagtaaacgttttaaaaatgctcactgagcagaatcctggtggcagcagcagtaagaaaagaaacgactga	2088	0.0	MVDASLGEIMTTCEKINWLLSEGEQWLKPEYRSSGRSMLHKRAKVEFHPLGVIGAIVSWNYPFHNIFNPMLVAIFSGNGIVIKVSEHASWSGCFYFRIIQSALAAIGAPEDLVEVITGFAETGEALVSSVDKVIFVGSPGVGKMIMNNAANTLIPVTLELGGKDAFIVCEDVDLDHVAQIAVRAVLQSSGQNCAGAERFYVHREIYSSFVSKVTKIVKSVTAGPPLVGKYDMGALCMHEHSEKLSGLINDALDKGAEIVARGSLGHIGEDAVDQYFPPTVIMNVNHSMRLMQEESELISLCPFLSRQEYLCPSPVVVIVSSDPISRASLRATPNHTCRKGKLRRTGLDVQLFCVALSGVRCPRVAFRSSEHLRAIAGLDKLSAWAIKCAFLGYSRVQKGYLKKAPRQGLPYEDKGNVQISRYYDSDYVGSLTNRHSTSGYCVFIGGNTISWKSKKRDVVVRSSVEAEYRTITFLTCELIWIKQFLQELKFCEIQQMKMYCDNQAVMHIACNPVFHERTKHIEVDCHFIREKAFGPIMPIMKFSSDEEVVRLANDSKYGLGCAVFSGNQSRAREIASQIHTGVAAVNDFASTYMCQSLPFGGVKHSGFGRFGGVEGLRACCLVKAVVEDRWWPFIKTKIPKPIQYPVAENGFEFQESLVEALYGLGIWDRLRALVNVLKMLTEQNPGGSSSKKRND	695

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g04000	695	PANTHER	ALDEHYDE DEHYDROGENASE-RELATED	4	295	-	-
	Pste6g04000	695	SUPERFAMILY	ALDH-like	521	633	IPR016161	GO:0016491
	Pste6g04000	695	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	158	165	IPR029510	GO:0016491
	Pste6g04000	695	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	186	197	IPR016160	GO:0016491
	Pste6g04000	695	Coils	Coil	695	695	-	-
	Pste6g04000	695	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	522	596	IPR016163	GO:0016620
	Pste6g04000	695	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	166	294	IPR016163	GO:0016620
	Pste6g04000	695	Pfam	Aldehyde dehydrogenase family	5	294	IPR015590	GO:0016491
	Pste6g04000	695	Pfam	Aldehyde dehydrogenase family	524	625	IPR015590	GO:0016491
	Pste6g04000	695	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	597	625	IPR016162	GO:0016491
	Pste6g04000	695	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	4	165	IPR016162	GO:0016491
	Pste6g04000	695	CDD	RNase_HI_RT_Ty1	422	531	-	-
	Pste6g04000	695	SUPERFAMILY	ALDH-like	5	294	IPR016161	GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g04000	Pste-Chr6	29298680	29308602	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g04000	528	692	Aldehyde Dehydrogenase Gene Family	AT3G66658	75.758	1.31e-85	279