Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste6g03973 | atggaatctggaaatccttcaacgccaacctctccttcggtcggtttcaacaccgatcagcttccgcacactcacaccagtcgtgcctccgacgacgaggcttcagtggatcccgacatcattagagacgacatcgaagaacaacccgaggaagaagaagatggagaggatctttacaacgagaatttcatggatgattacaggagaatggatgaggctgaccagttcgaatccttcgggctcgatgactccttggaagatgacagggattttgatcagatcatggaagatcgaagggctgcggagaatgaacttgacgcacgccagggtcgcgtttccaatcgcagtaaacttccccagcttctccatgaccaggatacagatgatgacagtcatagaccttctaaaagggctcgagctgacttcaggcctcccgtacaaagtgatgatgatcttcaaagttcacctggaaggtcacaacgagggcactcaagagaggatgttcctatgactgatccaactgaggatgatcgagatgatgatgaatttgatgatgggtacgagatgtatcaagttcaaggaacacttagagagtgggtaacaagagatgaagtgcgccgctttatagccaggaaattcaaggacttcttactcacgtatgttaatccaaaaaatgaacatcgtgacaaagaatatgtgtggctcataaatgagatggtgtcagctagtaagtgtagtttggagatcgattacaaacaatttatctatgttcatcccaacattgccatttggctagctgatgctcctcaatctgtcttagaagtaatggaagatgttaccaaaagtgtcgtctttgaattacatccaaattacagaaatatacaccaaaagatttatgtacgcataaccaacttgccagtttatgatcagattcgaaatataaggcagatacacttgaatacaatgatccggattgggggagtagttactcgacgctctggagttttcccccagttgcagcaagtgaagtatgactgcagcaaatgtggggcaattttgggtccttttttccagaattcttattcagaggtgaaagttggatcctgtcctgagtgtcaatcaaaaggaccgttcactgtcaatattgaacagacaatttataggaattttcagaagcttactcttcaagagagcccaggaatagttcctgcaggtcgacttccaagatacaaagaagtaatactattgaatgatctgattgactgtgctcgccctggggaagaaattgaggtcacaggtgtttataccaataattttgacttatccctaaacacaaaaaatgggtttccagtttttgccactgttgttgaggcaaattatgttacgaaaaagcaagaccttttctctgcctacaaacttacacaggaagatatagaagagattgaaaatttggccaaagaccctcgaattggagaaaggattattaaatctattgctccatcaatctacggtcatgatgacataaaaactgcaatagctttagctatgtttggaggccaagaaaaaaatgtggaaggaaagcatcgtctgcgaggagacataaatgttcttcttctaggtgatccaggaacggcaaagtctcagtttctcaagtatgttgaaaaaactggccagagagctgtatatactactggtaaaggggcttcagcagtgggtctcacggctgcagttcataaggatccagtcacaagagagtggactcttgaggggggagcccttgttctagcagacaaaggaatttgtcttattgatgagtttgacaagatgaatgaccaggatagggtgagtatccatgaagccatggagcagcagagtataagcatatcaaaagctggaattgttacatctcttcaggcacgctgttctgttattgctgcagcaaatcctattggaggaagatatgattcttcgaaaacattctctcaaaatgttgaattgacagatcctattatttctcgttttgacatcctctgcgttgtgaaggatgtcgttgatccagttgctgatgaaatgcttgcgacgtttgtggttgagagtcactttaaatcacaacccaagggtactaatcaagatgataaggcctttagtgagtctcaagatactcgtgcaactgccatgccaactgatccagagatacttcctcaagatctactgaagaagtacattacatatgccaagttgaatatttttccaaggttacaagatgccgatctggacaaactgtcacatgtttatgcggaactgcggagggaatcttcacacggacaaggagttcctattgctgtaaggcacattgaatcaatgataaggatgtctgaggctcatgcaagaatgcatctcagacaacatgttacgcaagtggatgtggacatggccattcgtgtcctacttgaatcatttatttcaacacaaaaatttggcgtgcagaaagctcttcaaaagagctttagaaagtatatgactttcaagaaggactataatgaactactcctttttattcttcgcgggcttgtaaagaatgctttgcattttgaagaaattgtcactggatctgcttcaggtttaacgcacatagatatcaaagtagatgatctctacaacatggctcaagggcacgacatttatgatctgaaaccattcttcaatagcagtcacttttcaagagccaattttgtattggatgaagaacggagagtgattagacatcaccttaccagatga | 2781 | 0.0 | MESGNPSTPTSPSVGFNTDQLPHTHTSRASDDEASVDPDIIRDDIEEQPEEEEDGEDLYNENFMDDYRRMDEADQFESFGLDDSLEDDRDFDQIMEDRRAAENELDARQGRVSNRSKLPQLLHDQDTDDDSHRPSKRARADFRPPVQSDDDLQSSPGRSQRGHSREDVPMTDPTEDDRDDDEFDDGYEMYQVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHRDKEYVWLINEMVSASKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVTKSVVFELHPNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCSKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDIEEIENLAKDPRIGERIIKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDILCVVKDVVDPVADEMLATFVVESHFKSQPKGTNQDDKAFSESQDTRATAMPTDPEILPQDLLKKYITYAKLNIFPRLQDADLDKLSHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQVDVDMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKKDYNELLLFILRGLVKNALHFEEIVTGSASGLTHIDIKVDDLYNMAQGHDIYDLKPFFNSSHFSRANFVLDEERRVIRHHLTR | 926 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste6g03973 | 926 | Pfam | MCM P-loop domain | 477 | 700 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste6g03973 | 926 | ProSitePatterns | MCM family signature. | 599 | 607 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Pste6g03973 | 926 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 500 | 823 | IPR027417 | - | |
| Pste6g03973 | 926 | MobiDBLite | consensus disorder prediction | 703 | 728 | - | - | |
| Pste6g03973 | 926 | MobiDBLite | consensus disorder prediction | 91 | 111 | - | - | |
| Pste6g03973 | 926 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 196 | 862 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste6g03973 | 926 | FunFam | DNA helicase | 470 | 843 | - | - | |
| Pste6g03973 | 926 | Pfam | MCM AAA-lid domain | 736 | 820 | IPR041562 | - | |
| Pste6g03973 | 926 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Pste6g03973 | 926 | FunFam | DNA helicase | 338 | 388 | - | - | |
| Pste6g03973 | 926 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 619 | 632 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste6g03973 | 926 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 591 | 605 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste6g03973 | 926 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 531 | 546 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste6g03973 | 926 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 670 | 678 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste6g03973 | 926 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 643 | 655 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste6g03973 | 926 | Gene3D | - | 311 | 436 | IPR012340 | - | |
| Pste6g03973 | 926 | ProSiteProfiles | MCM family domain profile. | 490 | 696 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste6g03973 | 926 | MobiDBLite | consensus disorder prediction | 78 | 184 | - | - | |
| Pste6g03973 | 926 | Pfam | Mini-chromosome maintenance protein 2 | 31 | 153 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pste6g03973 | 926 | Gene3D | - | 470 | 843 | IPR027417 | - | |
| Pste6g03973 | 926 | MobiDBLite | consensus disorder prediction | 37 | 60 | - | - | |
| Pste6g03973 | 926 | Pfam | MCM N-terminal domain | 211 | 304 | IPR027925 | - | |
| Pste6g03973 | 926 | Pfam | MCM OB domain | 310 | 437 | IPR033762 | - | |
| Pste6g03973 | 926 | CDD | MCM2 | 493 | 819 | - | - | |
| Pste6g03973 | 926 | SMART | mcm | 307 | 821 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pste6g03973 | 926 | FunFam | DNA helicase | 203 | 307 | - | - | |
| Pste6g03973 | 926 | Gene3D | - | 338 | 388 | - | - | |
| Pste6g03973 | 926 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 378 | 392 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pste6g03973 | 926 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 343 | 355 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pste6g03973 | 926 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 439 | 450 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pste6g03973 | 926 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 320 | 337 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pste6g03973 | 926 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 454 | 465 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Pste6g03973 | 926 | SUPERFAMILY | Nucleic acid-binding proteins | 212 | 459 | IPR012340 | - | |
| Pste6g03973 | 926 | MobiDBLite | consensus disorder prediction | 121 | 146 | - | - | |
| Pste6g03973 | 926 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
| Pste6g03973 | 926 | Gene3D | - | 203 | 307 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste6g03973 | Pste-Chr6 | 29010433 | 29015757 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste6g03973 | 15 | 921 | Core DNA Replication Machinery Family | AT1G44900 | 74.754 | 0.0 | 1348 |