Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03970 atgagcatgaacactagctaccctttttccccagctctctctagcatgtttgagatgatgccaccaccaacaacatcatctgatcccaacttcgttggcttcttggacttgttaggtcatgccactattcctaattataatccttctttattcgattgcccccaaaacacagttcccacatcacaatccgtcaccactcaaatcaattcccttcttccgtcgccggtgagttctaatgtccccgacggtggctccgaggtacttaacacaccccatcccccaactcatcatccatttcatcctcctccaatgaagcccttgctgctgccagcaaagcaaccaaaactgattatgagtttgaggatgaagcatctatggatgtaccgtcatcacccaaaggacaagaccaacatcaacataagactaacaaacagtaaattgaagccaaaaaagaagccccaaaagaagcaaagagacccaagatttgcattcatgacaaagagtgaagtggatcaccttgacgatggctataggtggcgcaagtacggtcaaaaagctgtaaaaaatagcccacatcctaggagctactatcgttgcaccaccgcgagttgtggcgtgaagaagcgagtggagcgttcctcagaggaccctacggtggtggtgacaacctacgaggggcaacacacgcacccttgtcctgccacatcacgggctagcctggggttcatgaaccttgaagcaagagggttcggacccacaactggactcacttcaccaccacactttatgctgccacatgaacagtttcgagaccaaaacatgcagcacctaacaacaatgctatataacaccacctcatcatcatcatcatcattgcctctgaatgttgttaactcaacttcttcttctattaactatgccaatacgtcgtcgttgagtgactcccttcgggatcaagaaaatcagcacggttttgcgtcttctaaggaggctttattgttgaggaacaatggccttcttcaagacattgtgccaatgcagatgaggaatgaggacactcaagatcgtgtatag 1074 0.0 MSMNTSYPFSPALSSMFEMMPPPTTSSDPNFVGFLDLLGHATIPNYNPSLFDCPQNTVPTSQSVTTQINSLLPSPVSSNVPDGGSEVLNTPHPPTHHPFHPPPMKPLLLPAKQPKLIMSLRMKHLWMYRHHPKDKTNINIRLTNSKLKPKKKPQKKQRDPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTASCGVKKRVERSSEDPTVVVTTYEGQHTHPCPATSRASLGFMNLEARGFGPTTGLTSPPHFMLPHEQFRDQNMQHLTTMLYNTTSSSSSSLPLNVVNSTSSSINYANTSSLSDSLRDQENQHGFASSKEALLLRNNGLLQDIVPMQMRNEDTQDRV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03970 357 Pfam WRKY DNA -binding domain 174 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste6g03970 357 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 137 275 IPR044810 GO:0003700
Pste6g03970 357 SUPERFAMILY WRKY DNA-binding domain 165 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste6g03970 357 SMART WRKY_cls 173 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste6g03970 357 ProSiteProfiles WRKY domain profile. 168 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pste6g03970 357 Gene3D WRKY domain 157 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pste6g03970 357 FunFam WRKY transcription factor 57 141 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03970 Pste-Chr6 28948656 28950358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03970 143 352 WRKY Transcription Factor Family AT2G47260 46.047 3.27e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pste6g03970 WRKY 1.4e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03970 6 28948656 28950358 Pste6g03970 6 28948656 28950358 ECH
Pste6g03970 6 28948656 28950358 Pste1g01796 1 5511713 5518399 PCT
Pste2g02998 2 30011778 30014086 Pste6g03970 6 28948656 28950358 PCT