Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03969 atgtgtgcatcgaatatgtggaaccaaaatctagcgataaattctagtgcctttcaaatcctttcaacttttaaacctataagagcgttaaatcaatttgatctgcaactggaagttttttacagaaatgtttgttgttgtttcataaaatatgctacctcagaagaagctgatcaggcaattagagcattacacaatcaccatacacttcctggaggtgttggtcccatccaagtgcgatatgctgatggtgaacgggaacgccttggtgcagttgagtacaaattatttgtgggctctctgaacaaacaagctactgtgaaggaagttgaggaaattttctcaaaatatggtcgggttgaagatgtttatcttatgcgcgatgagaagaaacaaagtcgtggatgtggttttgttaaatattcacacagagatatggctctggcagctattaatgcacttaatggaatctacacaatgcgaggatgtgagcagcctctaattgttcgttttgctgatcctaaaaggcctcgtcaaggagattccaggggtctcgcatttggaggtccagggtttggtcctagatttgatgcaccaggcccaatacttccatccaatattccagatcctatgggtgatcgaatgcctccccctaatgcttggcgtccaatgcatcccccaaatatggggccatcctctaatgctggtcttcatggcatgggaccactattgcttccaagatctggtgatatgacattgcctacaaatgcaagtggtcctatgactagcttgggaggccccatagatggtcgttttaaagttcagtctatgtcaccgatgtcacaacagaattttaaccagcccatgccacaaattccaccagtcaatcaacaaatatcaccattgcagaaacctattcaatcatcccaggaattgccaccttcccaccagttgtaccctcaggcacctgttccctacccacaaacatctcttaggcagcatggccagccacaacttcctctctctgctggtcctcatccatctcagctgatacatggcgtaagtggacagtttccaacttctcagccccaaactcaacggagtgctttgtctgctgcaattcctcagacccctcttgatactggcatgcaatctaatgctgcattaactactcccaatcaacagcaagttcctccctctgcgcagcagcagccacttcagcaatctccttctccattagctcagatgttgtcacaacaaacacagactttgcaagcaagctttcattcttctcagcaggccttctctcagcttcaacaacaattacagatgatgcaaccttctagtcaagcattaacattacagcaaaatgcagaagctaccaaaaagcagtctcaatgggccggggttgtaacccaagcagtgaccagcactcatgcagctgcacctgctgcagatgtgccttcatcaacacctgctaattctgccttaacatcaataaatcagaacatggctcttcccaaatgtaattggacagaacatatatctccagagggcttcaagtactactataatagtgtcactggtgaaagtcggtgggagaagcctgaggagttgacactatatgaacagcagaagcagcagcaaaggtcatctgttcagcagtctcaaattcagtcacagccttcaatactacctgtccagcaagttcctcagatccagcaggttcagcctcaaagtcatctccaaggacaagttctccaccaccaacagatacagcagcctttgtcttcttcgttccaaccatatggagctacaggccctcaaaatgttcaggaagttggttataaacaattacctggatccgttatttcttctggtgatccaggacgctactcacaggagtttgaacttcgggttgagcttgaggcggcacatacagatgttgcagctattaatggctgtggaacagaatctcttatctaa 1986 0.0 MCASNMWNQNLAINSSAFQILSTFKPIRALNQFDLQLEVFYRNVCCCFIKYATSEEADQAIRALHNHHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGLAFGGPGFGPRFDAPGPILPSNIPDPMGDRMPPPNAWRPMHPPNMGPSSNAGLHGMGPLLLPRSGDMTLPTNASGPMTSLGGPIDGRFKVQSMSPMSQQNFNQPMPQIPPVNQQISPLQKPIQSSQELPPSHQLYPQAPVPYPQTSLRQHGQPQLPLSAGPHPSQLIHGVSGQFPTSQPQTQRSALSAAIPQTPLDTGMQSNAALTTPNQQQVPPSAQQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTLQQNAEATKKQSQWAGVVTQAVTSTHAAAPAADVPSSTPANSALTSINQNMALPKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLYEQQKQQQRSSVQQSQIQSQPSILPVQQVPQIQQVQPQSHLQGQVLHHQQIQQPLSSSFQPYGATGPQNVQEVGYKQLPGSVISSGDPGRYSQEFELRVELEAAHTDVAAINGCGTESLI 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03969 661 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 163 IPR000504 GO:0003723
Pste6g03969 661 PANTHER RNA BINDING PROTEIN 44 447 - -
Pste6g03969 661 SMART ww_5 506 538 IPR001202 GO:0005515
Pste6g03969 661 ProSitePatterns WW/rsp5/WWP domain signature. 511 536 IPR001202 GO:0005515
Pste6g03969 661 Gene3D - 88 182 IPR012677 -
Pste6g03969 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Pste6g03969 661 Gene3D - 9 87 IPR012677 -
Pste6g03969 661 SUPERFAMILY RNA-binding domain, RBD 94 195 IPR035979 GO:0003676
Pste6g03969 661 MobiDBLite consensus disorder prediction 275 337 - -
Pste6g03969 661 Gene3D - 497 561 - -
Pste6g03969 661 ProSiteProfiles WW/rsp5/WWP domain profile. 511 538 IPR001202 GO:0005515
Pste6g03969 661 Pfam WW domain 509 536 IPR001202 GO:0005515
Pste6g03969 661 SMART rrm1_1 95 170 IPR000504 GO:0003723
Pste6g03969 661 SMART rrm1_1 5 80 IPR000504 GO:0003723
Pste6g03969 661 SUPERFAMILY WW domain 510 543 IPR036020 GO:0005515
Pste6g03969 661 MobiDBLite consensus disorder prediction 232 411 - -
Pste6g03969 661 FunFam Flowering time control protein FCA 90 180 - -
Pste6g03969 661 SUPERFAMILY RNA-binding domain, RBD 43 89 IPR035979 GO:0003676
Pste6g03969 661 MobiDBLite consensus disorder prediction 353 411 - -
Pste6g03969 661 CDD WW 508 538 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03969 Pste-Chr6 28924326 28933439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03969 85 230 Eukaryotic Initiation Factors Gene Family AT1G71770 31.373 1.50e-08 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03969 6 28924326 28933439 Pste6g03969 6 28924326 28933439 ECH