Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03949 atggccaaagaggccattttagtagcagttatgaacatgaatatgaatattgatgttattctgtctctccagttcctatgtttctttctttcaagtactttgttcattaaagcatatgcaataaatgtaacctatgaatctgatagaataatccaccttcctggccaaccttcaagtccctcagtctcacacttttcaggttacatcactgtcaatgaaaaccatgggagggctcttttctattggttctttgaagctcagtctgagccctccaagaagcctctccttctctggctcaatggaggacccggatgctcctccattgggtatggtgcagctgttgagattggacctcttataatcaaccaaaatggggaaggattacatttcaactcatactcctggaatcaagaagcaaatttgttatttgtggaatctcctgttggagttggattttcttacactaacacatcttctgatctcaccgttttagaggataattttgtggctgaggatacctacagtttcttggtgaattggctacaaagattcccgcagttcaaatcccgcgacttttttatatcaggagaaagctatgccggtcactatatacctcagcttgcagagttaatctttgatcgaaacaatgatgggaacaaatacccctttattaatcttaaaggttttattgtagggaacccagagactgatgattactatgactataaaggccttctggaatatgcatggagccacgcggttatatcagaccagcaatacgaagaagcaaaacaagtatgtgattttaaacgatttgattggtctaatgaatgcaacaaggccatgagcgaagtcttccaagattatttagaaattgacatatacaacatttatgcaccggcatgtcttctaaacaccacatcctcaacagctgatgatagctacactaacagccctgaatcatttactaaggggagaaatgattacagactaaagaggatgagaatttttgggggctatgacccttgttattccaattatgcagaagaatatttcaatagaaaagatgttcaatcatctttccacgcagaaaacaaaagagccactaatgtagcgtggaaggtttgcaataattccatattgcggacttacaacttctctgtgttctcgatcctacctgtctacaccaaactcatcaagggtggacttaagatatggatttacagtggagacgcagatggaagagtgccggttatagggacacgatattgcgttgaggctctcggattacctctcaagtctaggtggcgaacttggtaccatgataatcaggtgggaggaagaatagttgaatatgaaggattgacatatgtgacagtgagaggagctggtcacttggtgccattaaacaagccaagtgaggctctctccatcattcattctttcttaacaggctaccatcttcctactcgtggataa 1479 0.0 MAKEAILVAVMNMNMNIDVILSLQFLCFFLSSTLFIKAYAINVTYESDRIIHLPGQPSSPSVSHFSGYITVNENHGRALFYWFFEAQSEPSKKPLLLWLNGGPGCSSIGYGAAVEIGPLIINQNGEGLHFNSYSWNQEANLLFVESPVGVGFSYTNTSSDLTVLEDNFVAEDTYSFLVNWLQRFPQFKSRDFFISGESYAGHYIPQLAELIFDRNNDGNKYPFINLKGFIVGNPETDDYYDYKGLLEYAWSHAVISDQQYEEAKQVCDFKRFDWSNECNKAMSEVFQDYLEIDIYNIYAPACLLNTTSSTADDSYTNSPESFTKGRNDYRLKRMRIFGGYDPCYSNYAEEYFNRKDVQSSFHAENKRATNVAWKVCNNSILRTYNFSVFSILPVYTKLIKGGLKIWIYSGDADGRVPVIGTRYCVEALGLPLKSRWRTWYHDNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPSEALSIIHSFLTGYHLPTRG 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03949 492 Gene3D alpha/beta hydrolase 44 304 IPR029058 -
Pste6g03949 492 ProSitePatterns Serine carboxypeptidases, serine active site. 194 201 IPR018202 GO:0004185
Pste6g03949 492 Gene3D - 343 380 - -
Pste6g03949 492 FunFam Carboxypeptidase 391 485 - -
Pste6g03949 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 144 154 IPR001563 GO:0004185|GO:0006508
Pste6g03949 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 455 468 IPR001563 GO:0004185|GO:0006508
Pste6g03949 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 143 IPR001563 GO:0004185|GO:0006508
Pste6g03949 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 180 205 IPR001563 GO:0004185|GO:0006508
Pste6g03949 492 SUPERFAMILY alpha/beta-Hydrolases 50 488 IPR029058 -
Pste6g03949 492 FunFam Carboxypeptidase 340 488 - -
Pste6g03949 492 Pfam Serine carboxypeptidase 54 484 IPR001563 GO:0004185|GO:0006508
Pste6g03949 492 ProSitePatterns Serine carboxypeptidases, histidine active site. 455 472 IPR033124 GO:0004185
Pste6g03949 492 Gene3D - 391 485 - -
Pste6g03949 492 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 50 472 IPR001563 GO:0004185|GO:0006508
Pste6g03949 492 FunFam Carboxypeptidase 44 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03949 Pste-Chr6 28747364 28750519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03949 344 488 Calmodulin-binding Proteins AT2G22960 28.082 1.77e-13 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03949 6 28747364 28750519 Pste6g03949 6 28747364 28750519 ECH