LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g03944	atggatgaaaagggaggaagaagcaacaacagccttagtgaggacgagatgaaccttcgaagaggcccttggaccgtcgatgaggacctcactctcatcaattacattgccactcatggcgaaggtcgctggaacaccctcgccctctctgcagggctgaaacgaaccgggaagagttgcagattgaggtggctgaactatctccgtccagatgttcgacgtggaaacatcacactcgaagaacaacttttgattctggagctccattctcgctggggaaaccgatggtcgaaaattgctcaatatttgccgggtagaaccgacaacgagataaagaactattggagaacccgtgtccaaaagcatgcgaagcaactaaaatgtgacgtgaatagcaagcaattcaaggacaccatgcgttacctttggatgccaaggctagtggaacgcattcaagcagcggcggctgcttcggccaccaccacaacaacaaccacaaccgccgtcgatgccaacagtgcacatacgtatgggaacaacctcaacacaaccaacaaatttgaggttcaaaatcacaggggcaaattgggattacccgatcctgcggttatgaacaatgactttgtgggttcacatgtgacggaaagttacactccggagaatagtagcacggctgcatcatcatccgactcgttcggaactcaagtctcaacactttctgatttgactgagtattacagtgtccctgttagtagtaacaataacaataatcctgttggggattattatcaaccctctcaaattagttactccgattgcatcacaagcccatccgggttgttcccccaaggactagattttcaatccatggatccaaacacccagtggaacatgcaaagtggggacacttctgacaatttttggaacgttgaaagtatgttgttcttagagcagcaactcatgaatgacaacatgtga	978	0.0	MDEKGGRSNNSLSEDEMNLRRGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAAASATTTTTTTTAVDANSAHTYGNNLNTTNKFEVQNHRGKLGLPDPAVMNNDFVGSHVTESYTPENSSTAASSSDSFGTQVSTLSDLTEYYSVPVSSNNNNNPVGDYYQPSQISYSDCITSPSGLFPQGLDFQSMDPNTQWNMQSGDTSDNFWNVESMLFLEQQLMNDNM	325

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g03944	325	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	69	123	IPR017930	-
	Pste6g03944	325	SMART	sant	20	70	IPR001005	-
	Pste6g03944	325	SMART	sant	73	121	IPR001005	-
	Pste6g03944	325	Pfam	Myb-like DNA-binding domain	21	68	IPR001005	-
	Pste6g03944	325	Pfam	Myb-like DNA-binding domain	74	117	IPR001005	-
	Pste6g03944	325	FunFam	MYB transcription factor	78	141	-	-
	Pste6g03944	325	CDD	SANT	94	117	IPR001005	-
	Pste6g03944	325	Gene3D	-	78	141	-	-
	Pste6g03944	325	CDD	SANT	23	68	IPR001005	-
	Pste6g03944	325	SUPERFAMILY	Homeodomain-like	17	115	IPR009057	-
	Pste6g03944	325	MobiDBLite	consensus disorder prediction	212	233	-	-
	Pste6g03944	325	ProSiteProfiles	Myb-like domain profile.	16	68	IPR001005	-
	Pste6g03944	325	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	16	68	IPR017930	-
	Pste6g03944	325	FunFam	Myb transcription factor	21	73	-	-
	Pste6g03944	325	Gene3D	-	18	74	-	-
	Pste6g03944	325	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	16	213	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g03944	325	ProSiteProfiles	Myb-like domain profile.	69	119	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g03944	Pste-Chr6	28673604	28675453	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g03944	1	316	MYB Transcription Factor Family	AT3G06490	55.821	1.29e-93	279

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pste6g03944		Myb_DNA-binding	1.8e-14	CL0123