Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03902 atggctgagaccaccaaatgcattcccaactcacaattagagcttgatgacatgctgcaagaagcagaacatcgttggcttcgtcctgctgaaatatgtgagatacttcaaaattataagaagtttaagttaacaccagatccacctgctatgcctccagctggatctctattcttgtttgatcggaaagcactacgttactttcgcaaggatggtcaccggtggaggaagaaaaaagatgggaagactgtaagagaagctcatgaaaagttgaaggctggtagtgtggatgtcttgcattgttactatgcacatggtgaagataatgaaaacttccaacgaagaagttattggatgcttgacaagcaatttgagcacattgtccttgtgcattatcgagaaattaaagagggcagcaagtctggcatctcctatttgcatgtagttccaggaaccctggttggtagttgtcaaaataattcaatgcctttgtctctcaaaataaactcatcaatatctgtagttcaaacatctttcccatcaagtgcaaataaagttgatgagaatggacaagcttcagagtatgaggatgtcaattcacataatagtcctcaagcttcctctcatgctcagcctatcagcaattccatacatcccagtgcaccttgtcttactaatgaaacccctgggttttctgagtggttgaggaaccccttgatttcatcatggtcatcttctttccgtagctattgtcctggtactggcttgtctccctggaccttagttcagaactatagtagagacacacttaatatggatgatggaaaacatcatgttgaagaatctgttgaaggctctgaagctgacttcactgtgcataagctaaggaatgctgggttagatgctgttcacagaatgcaagatggagtaattttcagagataggctcatcgctgacatgtacatccagccagttataggagattttccgtctgcgaatcaggtgcaaaagggggatgatctggattcattccatgatcatccagttgttgcaactattacaattccagttgaacacaaacttcaagatggcggtggttcagacaatgatgaatcagaactagttgaatttggggaaatgaagaaactcgatagttttggaaggtggatggataaggagattggtggagattgcaataattccttgatggcttcagattctggtaattattggagtactcttgatgctcataatgaggataaggaggtgtctagtttacgccacatgcatttggatattgattcattaggcccttctctttcccaagaacaactatttagtatccatgacttttctccagattgggcctatactggggttagaacaaaggttttaatagttggcacatttctggggagtaaaaagctttctagtgagaccaaatggggatgtatgtttggtgaaattgaggtttctgctgaagttttagcagataatgtgatacggtgtcagactcctttgcattcacctggtcgtgtaccattctatgttacttgcagtaatagattagcctgcagtgaggtcagggaatttgcatttaatgaacatccaaccaaatttttaggttctgtgggtattaaaatctcaccagaagatgaggtacatcttcaaatgcgacttcttaaactactagatttgggacctggcaataagtggttgaagtgctctgtttctgaatgtgaaaaatgtaaactcaagcaaacaatgtattccatgagaaattatagtagagtatttgaagaaactatccagattgatggaactgctagtataaaccctaaagatgtattatttcaaagattaatgaaagacaagcttcatgagtggttgatatataaggttcatgaagaaggaaaaggaccacatgtgttggatgatgaaggccaaggagtaatacatttggcagctgcacttggttatgcgtgggctatgaccccattagttgctgctggtgtcagtcctaactttagagacacttgtggaagaacagggcttcactgggcatcatattttgggagagaagaaactgttactgtgctagttcaattaggtgcagccccaggtgctgttgaggatccaacatcagcacttcctcgaggacaaacagcagctgatttagcttcaagtagaggacataaaggaattgctgcgtatttggctgaggcagatctgactaatcaattatctgtattgactgtcaagggaaatgagtctggcagcatttctacaaccatagcagctaacagtgcctttcactctgctgaagatgactcatataatatgacaatggatgagcaacattatctcaaggagtcactttctgtgtttcaaaaatctgctcatgctgctgcttcaatcctagcagcattcagagcaaggtcattttgtcagaggcaactgggcaaaagtagcagcgatatttctgaagcagtacttgacgtagttgctgattctttgagcaaggtacagaatatgggtcactttgaggattatttacattttgcagctttaaagattcaaaagagatatcgtggatggaaaggaagaaaagattttttgaagatacgtgatcgcattgtaaaaatccaggctcatattaggggacaccaagttcgtaagcactacaaaaaagttgtttggtctgttagcattgtggaaaaagtgatactgcgttggagacgcaaaggagctggtctgagaggattccgggttggggagccagttggcgctgtggctaaagaagctgagtatgaatttcttagcattgggaggagacagaaatcagatgatgtaaagaaagctctcgatagagtcaagtccatggttcataatccagaggcaagggatcagtatatgaggctcatcatgaaatatcataagtttaagattgatggtggaagcagccaatcaacggcacagcatgtcggttag 2991 0.0 MAETTKCIPNSQLELDDMLQEAEHRWLRPAEICEILQNYKKFKLTPDPPAMPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNENFQRRSYWMLDKQFEHIVLVHYREIKEGSKSGISYLHVVPGTLVGSCQNNSMPLSLKINSSISVVQTSFPSSANKVDENGQASEYEDVNSHNSPQASSHAQPISNSIHPSAPCLTNETPGFSEWLRNPLISSWSSSFRSYCPGTGLSPWTLVQNYSRDTLNMDDGKHHVEESVEGSEADFTVHKLRNAGLDAVHRMQDGVIFRDRLIADMYIQPVIGDFPSANQVQKGDDLDSFHDHPVVATITIPVEHKLQDGGGSDNDESELVEFGEMKKLDSFGRWMDKEIGGDCNNSLMASDSGNYWSTLDAHNEDKEVSSLRHMHLDIDSLGPSLSQEQLFSIHDFSPDWAYTGVRTKVLIVGTFLGSKKLSSETKWGCMFGEIEVSAEVLADNVIRCQTPLHSPGRVPFYVTCSNRLACSEVREFAFNEHPTKFLGSVGIKISPEDEVHLQMRLLKLLDLGPGNKWLKCSVSECEKCKLKQTMYSMRNYSRVFEETIQIDGTASINPKDVLFQRLMKDKLHEWLIYKVHEEGKGPHVLDDEGQGVIHLAAALGYAWAMTPLVAAGVSPNFRDTCGRTGLHWASYFGREETVTVLVQLGAAPGAVEDPTSALPRGQTAADLASSRGHKGIAAYLAEADLTNQLSVLTVKGNESGSISTTIAANSAFHSAEDDSYNMTMDEQHYLKESLSVFQKSAHAAASILAAFRARSFCQRQLGKSSSDISEAVLDVVADSLSKVQNMGHFEDYLHFAALKIQKRYRGWKGRKDFLKIRDRIVKIQAHIRGHQVRKHYKKVVWSVSIVEKVILRWRRKGAGLRGFRVGEPVGAVAKEAEYEFLSIGRRQKSDDVKKALDRVKSMVHNPEARDQYMRLIMKYHKFKIDGGSSQSTAQHVG 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03902 996 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 979 - -
Pste6g03902 996 Pfam IPT/TIG domain 448 524 IPR002909 -
Pste6g03902 996 SUPERFAMILY E set domains 448 533 IPR014756 -
Pste6g03902 996 ProSiteProfiles Ankyrin repeat region circular profile. 680 705 - -
Pste6g03902 996 Gene3D Immunoglobulins 441 539 IPR013783 -
Pste6g03902 996 ProSiteProfiles IQ motif profile. 852 881 IPR000048 GO:0005515
Pste6g03902 996 FunFam Calmodulin-binding transcription activator 2 851 899 - -
Pste6g03902 996 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Pste6g03902 996 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Pste6g03902 996 Gene3D - 618 750 IPR036770 -
Pste6g03902 996 SMART CG_1_2 18 136 IPR005559 GO:0003677
Pste6g03902 996 MobiDBLite consensus disorder prediction 183 221 - -
Pste6g03902 996 SMART iq_5 874 896 IPR000048 GO:0005515
Pste6g03902 996 SMART iq_5 851 873 IPR000048 GO:0005515
Pste6g03902 996 ProSiteProfiles Ankyrin repeat profile. 680 712 IPR002110 GO:0005515
Pste6g03902 996 Gene3D - 850 899 - -
Pste6g03902 996 ProSiteProfiles IQ motif profile. 875 903 IPR000048 GO:0005515
Pste6g03902 996 SUPERFAMILY Ankyrin repeat 626 742 IPR036770 -
Pste6g03902 996 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 848 902 IPR027417 -
Pste6g03902 996 CDD IPT_PCSR 447 514 - -
Pste6g03902 996 FunFam Calmodulin-binding transcription activator 2 441 538 - -
Pste6g03902 996 SMART ANK_2a 719 749 IPR002110 GO:0005515
Pste6g03902 996 SMART ANK_2a 680 709 IPR002110 GO:0005515
Pste6g03902 996 Pfam IQ calmodulin-binding motif 877 896 IPR000048 GO:0005515
Pste6g03902 996 Pfam IQ calmodulin-binding motif 855 872 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03902 Pste-Chr6 28229560 28237782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03902 380 994 CAMTA Transcription Factor Family AT5G64220 43.239 2.25e-161 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pste6g03902 CG-1 1.8e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03902 6 28229560 28237782 Pste6g03902 6 28229560 28237782 ECH