Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03896 atggagttaactccaagaggaagaacccaaggtcatgtgttgacctttgagagagatgcagattcctttgtggaggaagataaggagctacagtccaagtgggctgctattgagaaactacccactttcaaaaggattaagacttcttttgttgatgtcagtcaggaggagagtggaagcagcagcaaagaagcagatggcaaaagggtggttgatgttaccaagcttggagcagtggaaaagcgtttattcattgacaggctcataaagcacattgagaatgataacctccagttgctgcagaaactaagagaaaggatggacagagtcaatgtgaagttacctactgtggaggtcaagtacaagaacctgaatgtaggagtagaatgtgaggttgttcaaggcaaggcactcccaaccctatggaattctttttctagctcactttctggtttcatgaagattgtatcctgtacctctcaaggagcagagataagcattctgaatgatgtcagtggcatcataaagccatcaaggcttactcttcttcttggtccaccaggctgtgggaaaacgaccttgttgagggcactggctggaaaactagagaaatccctcaaggtttctggagaaatctcttacaacggttacaagcttgatgagtttgttccccagaaaacatccgcttacataagtcagtatgacctgcacattccagagatgacagtgagagaaacaatcgacttttcagctcgctgtcagggtgttggaagcagagctgatctagtggctgaaatcaccaggagagaaaaagaagaaggaatcatccctgacccagatattgatacctatatgaaggcaatttcagttgaaggacaaagcgaaaatcttcaaacagaatatgttttaaagattctcggattagatatctgtgctgacatactggtaggcgacgcactagacagaggcatttcaggtggacagaagaaaaggcttactacaggagagatgattgtgggtcccataaaagcgctttttatggatgaaatatcaactggcttggacagttccacaacctttcaaatagttacatgtctccagcaattggtacacattacagatgcaactgcagtgctttcactccttcaaccagcaccagaaacatatgagttgtttgatgatcttatattgatggcagaggggaaaatagtataccatggtccccgcagtcaagcacttcaattttttaaggattgtggtttctggtgcccagaaaggaaaggagtggcagactttcttcaagaggtaatctctaagaaggatcaaaggcaatactggtaccgcacagatattccttacagatatgtttcagtggatgaattctctcaaatattcaaatcaagttattggggcagaatgttaaatgatgagctcttacagccagatgataaatctgaatcccataaaaatgctttatcatttagcaagtactccttaggaaaatgggatttgtttaaagcttgtatgaagagggaggttcttctcttgaaacgaaactcatttatttatgtatttaagactgcacagcttactatcacagcaatcataacaatgacagtcttcttacgtactcaacgtgctgtggatttgataggtgcaaactatttattgggttcattgtactatacacttgtccgcctcatgactaatggagttgcagagttgatcatgactattactagactccctgttgttgataaacagaaagaattctatctttacccagcttgggcttactgccttccttctgccattctaaagattccattttcgtttcttttacttgtcactttgcatatgtcatcaacctccatgtgtcgttgccttgcttcagttttcaaaactgatgttgcagctacaactattggttccttggtcttaggactgatgttcttgtttggaggctttattcttcctcggccatcactaccacggtggttgaggtggggattttggctttctcccatgtcatatggagaaataggaataacactaaatgaatttcttgctcctcgctggcaaaagatccaagagggaaatatcacagtagggaatgaggttcttaggagtcatggtttagactttgacagcaatttctattggctatcagttgtggccctacttggtttcaccgtactatttgattttggatttgtcttagcattatcatacataaaacagcctaagatgtctcgagctttggtatcaaaaaagagtctctctcaactaaggggacgagaaaagagcaatggtgtcgaactaaagtcagttactgttaatattggccacacagcaagagaaaatcaaagcacagggaaaatggtcctgccctttcagccactgacaatagcatttaaggatgtccagtattttgttgacattcctccggagatgaaaaaacatggttctgatgagaaaaggctacaattgctccgtgatatcacaggagcctttaggccaggaattctcactgcactgatgggggtcagtggagcagggaagacaactctgatggatgttctttcaggaagaaaaactggaggtatcattgaaggagatataagaattagagggtaccccaaagtgcaaaagacatttgcaagagtttcaggttactgtgagcagaatgacatccattctccatatataaccgttgaagaatctgtcacatactcagcttggttgcggttgccaacagaaattgattcagtcacaaaagggaaatttgttgaagaagtccttgaaacaatagaacttgatgatataaaggattgtttagttggtatccctggccaaagcggcttatctaccgaacaacgtaaaagactaaccattgcagtggagctggtttccaatccctcaattatattcatggatgaacctacatctggtttggatgctcgagcagctgcagttgttatgcgtgcggtgaagaatgttgttgccactggcagaacaacggtttgcactattcaccaaccaagcatcgatatatttgaaacttttgatgagaatatacctggggtgccaaagatcaaggacaattataatcctgcaacctggatgttggaagctaccactgcatctgtagaagcagaacttcaaatagattttgccgaaatatataaagagtcacacctttaccgggatacccttgaattggtgacagagttaagtgaaccaccaccagattcaagagacttacacttttcaactcgcttcccacaaaatagtttgggacagttcatggcatgcctttggaaacaacacttgtcttactggagaagtcccgagtacaatttaacacgtttcattttcatgattgtttgttcaatcatatttggagcagtattctggcagaaagggactaaaataaacaatcagcaggatttgttcaacgtactaggatcaatgtatattgctgtaatattcttgggcctaaattactgttcaacaattctgccatacgtggctactgagcgtgctgtcttgtatcgtgaaaaatttgctggaatgtattcttccacagcttattcatttgcacaggtggccattgaaataccatatatcttagtgcaatcaattttatacgtggctatcacatatccaatgataggttaccattggtcagttcagaaagtgttttggtacttctacaccacattcttctacaccatattcaatctcttctctggattcctcttgccaggaccgaaaattcctaaatggtgggtttggtgctactggatctgtcctactgcttggtccttgaatggtctcctaacatcacaatatggagacttggagaaggaggtactcgtatttggggagaaaaaatccattggttcctttttacgagattactatgggttccggcatgacagattaagccttgtggctgtggtgctcattgcttatccaattatttatgcttctctatttgcctatttcatagggaaaatgaattaccagaagagatga 4041 0.0 MELTPRGRTQGHVLTFERDADSFVEEDKELQSKWAAIEKLPTFKRIKTSFVDVSQEESGSSSKEADGKRVVDVTKLGAVEKRLFIDRLIKHIENDNLQLLQKLRERMDRVNVKLPTVEVKYKNLNVGVECEVVQGKALPTLWNSFSSSLSGFMKIVSCTSQGAEISILNDVSGIIKPSRLTLLLGPPGCGKTTLLRALAGKLEKSLKVSGEISYNGYKLDEFVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRADLVAEITRREKEEGIIPDPDIDTYMKAISVEGQSENLQTEYVLKILGLDICADILVGDALDRGISGGQKKRLTTGEMIVGPIKALFMDEISTGLDSSTTFQIVTCLQQLVHITDATAVLSLLQPAPETYELFDDLILMAEGKIVYHGPRSQALQFFKDCGFWCPERKGVADFLQEVISKKDQRQYWYRTDIPYRYVSVDEFSQIFKSSYWGRMLNDELLQPDDKSESHKNALSFSKYSLGKWDLFKACMKREVLLLKRNSFIYVFKTAQLTITAIITMTVFLRTQRAVDLIGANYLLGSLYYTLVRLMTNGVAELIMTITRLPVVDKQKEFYLYPAWAYCLPSAILKIPFSFLLLVTLHMSSTSMCRCLASVFKTDVAATTIGSLVLGLMFLFGGFILPRPSLPRWLRWGFWLSPMSYGEIGITLNEFLAPRWQKIQEGNITVGNEVLRSHGLDFDSNFYWLSVVALLGFTVLFDFGFVLALSYIKQPKMSRALVSKKSLSQLRGREKSNGVELKSVTVNIGHTARENQSTGKMVLPFQPLTIAFKDVQYFVDIPPEMKKHGSDEKRLQLLRDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIRGYPKVQKTFARVSGYCEQNDIHSPYITVEESVTYSAWLRLPTEIDSVTKGKFVEEVLETIELDDIKDCLVGIPGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVATGRTTVCTIHQPSIDIFETFDENIPGVPKIKDNYNPATWMLEATTASVEAELQIDFAEIYKESHLYRDTLELVTELSEPPPDSRDLHFSTRFPQNSLGQFMACLWKQHLSYWRSPEYNLTRFIFMIVCSIIFGAVFWQKGTKINNQQDLFNVLGSMYIAVIFLGLNYCSTILPYVATERAVLYREKFAGMYSSTAYSFAQVAIEIPYILVQSILYVAITYPMIGYHWSVQKVFWYFYTTFFYTIFNLFSGFLLPGPKIPKWWVWCYWICPTAWSLNGLLTSQYGDLEKEVLVFGEKKSIGSFLRDYYGFRHDRLSLVAVVLIAYPIIYASLFAYFIGKMNYQKR 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03896 1346 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 803 1056 IPR003439 GO:0005524
Pste6g03896 1346 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 22 613 - -
Pste6g03896 1346 Pfam ABC-2 type transporter 383 461 IPR043926 GO:0140359
Pste6g03896 1346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 425 IPR027417 -
Pste6g03896 1346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 828 1015 IPR027417 -
Pste6g03896 1346 SMART AAA_5 177 402 IPR003593 GO:0016887
Pste6g03896 1346 SMART AAA_5 840 1033 IPR003593 GO:0016887
Pste6g03896 1346 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 153 425 IPR003439 GO:0005524
Pste6g03896 1346 Gene3D - 153 418 IPR027417 -
Pste6g03896 1346 Gene3D - 817 1026 IPR027417 -
Pste6g03896 1346 Pfam ABC transporter 168 350 IPR003439 GO:0005524
Pste6g03896 1346 Pfam ABC-2 type transporter 611 688 IPR013525 GO:0016020|GO:0140359
Pste6g03896 1346 Pfam ABC-2 type transporter 1101 1247 IPR013525 GO:0016020|GO:0140359
Pste6g03896 1346 FunFam ABC transporter G family member 40 817 1029 - -
Pste6g03896 1346 Pfam Plant PDR ABC transporter associated 693 755 IPR013581 -
Pste6g03896 1346 CDD ABCG_PDR_domain1 164 407 IPR034001 -
Pste6g03896 1346 Pfam ABC transporter 831 983 IPR003439 GO:0005524
Pste6g03896 1346 FunFam ABC transporter G family member 34 154 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03896 Pste-Chr6 28163950 28185435 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03896 828 1015 Calmodulin-binding Proteins AT2G36910 28.571 1.42e-07 54.3