Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03893 atggaggctgagtttgagggtaagaatcagttcttgtatggaatgaagaaagctgttgttggaaatgggaggaggagtttggaatgggatttgaatgattggaaatgggatggtgatcttttcattgctcaaccattcaattcagtgccatcagattgtaggagtcgccagtttttcccgcctcatcctgaaaatccttcaaaacatgctaatccatcaaccaatttgtctttttcagtattcaactcaggtgaaggaaggagggaattggagaaaaggaggagaggtagtgttttaggtgaaggtgaagaggagcggctaaatgatgagggtggttctcttagtttgaatcttgggggtcaaggttaccctctcactgtggaaggagatgaaaaaagtggaaagaagacaaaggtaattgggaccaatactgctgctactactacctctaaccgtgctgtttgtcaggtgcaagattgtagggctgatcttagtgattccaaggattaccaccgtcggcacaaggtttgtgatgttcattctaaggccactatggcactagtgggaaatgttatgcaacgtttctgtcaacagtgtagcagaaaagggaagatcctttatttcttgcagtttagtcctaagcagaagtttcatgttcttcaagaatttgatgaagggaagagaagttgtcgtaggcgtctggcgggccacaataggaggagaagaaaaacgcatcctgatgtaactgttgttaatgaaggctctctgaatgatgaaaggagtagtagctatctgttaatgagtctgttacggatactgaccaatttacattcaaatggctcagatcatacaaggaaccaggatattctctctcatctgctgaggaacctggcaagtctggctggtccaattaatggtagaagcttagcacccttgttggaggaatctaaaggtttggtaaatgctgaggcacctggagctgctcatgataaacccaaacttaattatggttttgaagcttccgggccttgtggttcttccatcaagacagacaatggcatcatcagtcaggatcttcctatgtcgcttgcgcagtgcaaaacagtgcctggtaatggtaggacacaaaaatgtatatcttcaggtgatggtggagtaagaaatttaaagcttccatcaggaccactgctctcaagtgtacgtcaatcaagtgaaagccttccatctcaactaactgctgcagcagaggctaaagtaggaaggagcagcttaaataacattgaccttaataatgtatacaatgatatgcagaatactgttgagaatcatatgaagcctcatcctcctgtggattcagagattgtgtctattgatcatccctcatggttgcaatgtgattctctcaaatcaagtcctccacagacaactaggaactcagattcaacctctactcaatcaccatccaatcgaattgtttttaaactctttggcaaggatccaaatgattttccccatcttctccgatcacagattttcaactggttatctcacagtcccacagagatagaaagctatataaggccaggttgtatcatattaacaatatatctccgccttgaaaaatctgcatggaaggagcttcactgtaatctaggatcaagcttgagaaagcttcttgctgaatccaatgattcattttggagcgcaggatgggtatacgcaagggtgcagcactctgtagcttttctctataacggtcaggtagtcttagatgtgcccttgcgtctcaaaagccaacaacattttaggatttcatgcattaaaccacttgctgttcctccaggtgctagtgctcaatttattgtgaaaggtttcaacctttcccagtctagtacaaggttgctctgtgcactagaagggaagtatctggtacatgctagtggtcatgatttgattgatggagtagattcatccattcaacatctcagattctcgtgtcatataccaaatataactgggagggggtttattgaggtggaagatcatggtcttagcagctgttcctttccatttatagttgcaaagcaagaagtatgtttagagatctgcaagctggagaatgtgattgaagcagctgaaaccacttacgacatccagataaaaaaccaaaagatggaagaaaaaacacaagcattgaatttcttacaagaaatgggttggctccttcatagaagtcatgtgaaagttcggctaggtcacatgactcctatccatgatttctttcaattcagccggtttgcttggctcattgacttctcaatggaccagggttggtgtgctgtaatgaagaaactattggacattatatttgagggtggtgttgatgcaggagaacatgcttccattgagctggcattactacacatgaatcttctacacagagctgtaaagagaaactgtaggcctatggtagaagtacttttaagatttgtgccagtcaaaacctcagatagagacagtgaagtgaagcatgttgacaaggctgctgacagattcttatttagacctgatacagttgggccagctgggttgactcctcttcatgttgcagcaagtatcattggctcagagaacgtgctggatgcattaactgatgatccaggaatggtaggaattgaggcatggaaaagttcccgagacagtgcaggtttgacccccaatgactatgcatgccttgggggttattactcttacattcatcttgtcctaaataaaaccagaaaaaaagttgaaagacaacaggtggttgatattcctggtgctgttgtagatagtagcacaaagcagaagcaatcagaggtgtacaggacatgtagagtttcaagtttacagactgagaagattgaaaccacagcaatgccacagcaatgcggtttatgccagcagaaggtggcttatggtggcatgagaacagcactggtttataggccactcatgctctctatggtgaccatagcagctgtgtgtgtatgtgtggccttgctcttcaaaagctcacctagagtttactatgtgttccagcccttcaactgggaatcattggagtatggggcaatataa 3120 0.0 MEAEFEGKNQFLYGMKKAVVGNGRRSLEWDLNDWKWDGDLFIAQPFNSVPSDCRSRQFFPPHPENPSKHANPSTNLSFSVFNSGEGRRELEKRRRGSVLGEGEEERLNDEGGSLSLNLGGQGYPLTVEGDEKSGKKTKVIGTNTAATTTSNRAVCQVQDCRADLSDSKDYHRRHKVCDVHSKATMALVGNVMQRFCQQCSRKGKILYFLQFSPKQKFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDVTVVNEGSLNDERSSSYLLMSLLRILTNLHSNGSDHTRNQDILSHLLRNLASLAGPINGRSLAPLLEESKGLVNAEAPGAAHDKPKLNYGFEASGPCGSSIKTDNGIISQDLPMSLAQCKTVPGNGRTQKCISSGDGGVRNLKLPSGPLLSSVRQSSESLPSQLTAAAEAKVGRSSLNNIDLNNVYNDMQNTVENHMKPHPPVDSEIVSIDHPSWLQCDSLKSSPPQTTRNSDSTSTQSPSNRIVFKLFGKDPNDFPHLLRSQIFNWLSHSPTEIESYIRPGCIILTIYLRLEKSAWKELHCNLGSSLRKLLAESNDSFWSAGWVYARVQHSVAFLYNGQVVLDVPLRLKSQQHFRISCIKPLAVPPGASAQFIVKGFNLSQSSTRLLCALEGKYLVHASGHDLIDGVDSSIQHLRFSCHIPNITGRGFIEVEDHGLSSCSFPFIVAKQEVCLEICKLENVIEAAETTYDIQIKNQKMEEKTQALNFLQEMGWLLHRSHVKVRLGHMTPIHDFFQFSRFAWLIDFSMDQGWCAVMKKLLDIIFEGGVDAGEHASIELALLHMNLLHRAVKRNCRPMVEVLLRFVPVKTSDRDSEVKHVDKAADRFLFRPDTVGPAGLTPLHVAASIIGSENVLDALTDDPGMVGIEAWKSSRDSAGLTPNDYACLGGYYSYIHLVLNKTRKKVERQQVVDIPGAVVDSSTKQKQSEVYRTCRVSSLQTEKIETTAMPQQCGLCQQKVAYGGMRTALVYRPLMLSMVTIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGAI 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03893 1039 Gene3D - 146 231 IPR036893 GO:0003677|GO:0005634
Pste6g03893 1039 Pfam SBP domain 155 243 IPR004333 GO:0003677
Pste6g03893 1039 MobiDBLite consensus disorder prediction 467 486 - -
Pste6g03893 1039 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 68 905 IPR044817 GO:0003677
Pste6g03893 1039 ProSiteProfiles Zinc finger SBP-type profile. 152 244 IPR004333 GO:0003677
Pste6g03893 1039 MobiDBLite consensus disorder prediction 85 110 - -
Pste6g03893 1039 MobiDBLite consensus disorder prediction 53 119 - -
Pste6g03893 1039 SUPERFAMILY SBT domain 153 249 IPR036893 GO:0003677|GO:0005634
Pste6g03893 1039 Coils Coil 718 738 - -
Pste6g03893 1039 Gene3D - 729 938 IPR036770 -
Pste6g03893 1039 SUPERFAMILY Ankyrin repeat 808 924 IPR036770 -
Pste6g03893 1039 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03893 Pste-Chr6 28133750 28143626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03893 179 318 SBP-box Gene Family AT2G47070 52.857 1.23e-34 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste6g03893 SBP 2.3e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03893 6 28133750 28143626 Pste6g03893 6 28133750 28143626 ECH
Pste6g03893 6 28133750 28143626 Pste2g01109 2 11999543 12010511 PCT