Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03889 atggcatctgatctaaattcagggttgtccaaggaaacgtctgttttagggttgaaagcatgggaattaatggggataatagttgggttgttcattataatcatacttgtggtgatatcaatatgtcttacctcaagaaagaaatctagaagagtcaatggcatgcttccccttagccatatgttatctgtttctgaagagataaaggatatcagagttgatcaagtttctgccaataatcatcctcagaatggagcttttatgagcctgtatgacaggtttagtgacagggactcggagaaggttttaatccaaacaaagaatggggaaaatagcagtcaatcaggctcatttgttcatcttaagaaagatgatggtggctctcaatcaggtgaagaaagtggtgctaagtctgtttctacttacaggtcttcttctcatcctataactgcaccatcacccttgtctggtctgcctgaattctctcaccttggctggggacactggtttacattaagagacctagaacttgcaacaaacaggttttcaaaagataatgtaattggtgagggtggatatggagttgtttatcaaggccagttaatcaatgggagtcccgtcgctgttaagaagctactcaataatctaggacaagcagaaaaagaatttagagtggaagttgaggctattggccatgtgcgtcacaagaatttggttagacttttgggctattgcattgaaggcactcacaggttgttggtttatgagtatgttaacaatggcaatttggagcaatggcttcatggagccatgcgccaatatggttttcttacttgggatgctcggattaaaattctcctgggaacagctaaagcactcgcttacttgcacgaggcaattgagccaaaagttgtacatcgagatattaaatcaagcaatattttaattgatgatgacttcaatgccaagatatctgactttgggctggcaaagctattgggtgctggaaaaagtcatatcacaactcgagtaatgggtacttttggatatgttgctccagaatatgccaattctggcttactaaacgagaagagtgatgtttatagttttggggttttgctccttgaagcagtcactggaagagacccagtggattatagtcgaccagcagctgaggtaaatttggttgactggctcaagatgatggttgggaataggcgtgcagaagaggtggtagaccctaacattgagaccaggccatcaacaagtgcccttaaacgtgcccttttaactgctttgaggtgtgtagatccagattctgagaaaagaccaaagatgagccaagtagtccgcatgcttgaatcagaggaatatcccataccccgagaggatcgaagacgccgaaagagtcaggcaggaaatatggagctggagaaccaaaagcagacttctgatacagagaagaatgacaatccagattctaagtctaatggcagaaggcaccaaagaaagtag 1515 0.0 MASDLNSGLSKETSVLGLKAWELMGIIVGLFIIIILVVISICLTSRKKSRRVNGMLPLSHMLSVSEEIKDIRVDQVSANNHPQNGAFMSLYDRFSDRDSEKVLIQTKNGENSSQSGSFVHLKKDDGGSQSGEESGAKSVSTYRSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYQGQLINGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQYGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAVTGRDPVDYSRPAAEVNLVDWLKMMVGNRRAEEVVDPNIETRPSTSALKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRKSQAGNMELENQKQTSDTEKNDNPDSKSNGRRHQRK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03889 504 SMART serkin_6 182 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03889 504 PANTHER OS01G0323000 PROTEIN 4 485 - -
Pste6g03889 504 MobiDBLite consensus disorder prediction 131 151 - -
Pste6g03889 504 MobiDBLite consensus disorder prediction 439 504 - -
Pste6g03889 504 MobiDBLite consensus disorder prediction 106 151 - -
Pste6g03889 504 CDD STKc_IRAK 188 454 - -
Pste6g03889 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Pste6g03889 504 Gene3D Transferase(Phosphotransferase) domain 1 258 470 - -
Pste6g03889 504 FunFam Putative receptor-like protein kinase 164 257 - -
Pste6g03889 504 MobiDBLite consensus disorder prediction 439 474 - -
Pste6g03889 504 FunFam Putative receptor-like serine/threonine-protein kinase 258 469 - -
Pste6g03889 504 Pfam Protein kinase domain 183 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03889 504 ProSiteProfiles Protein kinase domain profile. 182 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03889 504 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Pste6g03889 504 SUPERFAMILY Protein kinase-like (PK-like) 166 461 IPR011009 -
Pste6g03889 504 Gene3D Phosphorylase Kinase; domain 1 163 257 - -
Pste6g03889 504 MobiDBLite consensus disorder prediction 481 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03889 Pste-Chr6 28082790 28091856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03889 17 456 Trihelix Transcription Factor Family AT1G70460 39.326 7.10e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Pste6g03889 Pkinase 6e-49 CL0016