Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03879 atggttattatgacgaagcttggggagaagaagaatgagagggaaggaatgcgacttgggaaatacgagttgggtaggactcttggtgaaggcaattttggtaaagtcaagatcgctagaaacactgactctgaccaaccttatgctgttaagatcatcgataagaataagataatcgatctcaacatcaccaatcagataaagagggaaatagccaccttaaagcttctcagacatcccaatgttgttagattgtatgaggcatccaagggtaagcttaccgaacgtgaaggtaggaaggtattccaacagatgattgatggagtaagctactgccacactagaggtgtcttccacagggatctcaagcttgagaatgtactagtggataacaaagggaacataaaaataacagattttggccttagtgctttaccacagcatcttagggcagatggacttctgcataccacttgtggaagtcccaattatgtcgcacccgaggttctggctaataagggatatcatggtgcaacatcagatacatggtcatgtggtgttatattatatgtaatcctagttggatacctacctttcgatgatagaaatattgtagttctttatcagaagattcttaaaggagatgttcagattccggcatggctatcaccgggtgcacgaaacatgataaagaggattcttgatcccaaccccgaaacacggataacaatggctgagatcaaagaagatccatggttcaagaaaggttatattccagcaaatcccgaggatgaggatgtatatgttgacaatgaagcctttcccatccgtgaagagacaaatgaagtagaacagagaaactcaggatcagcaacccttatcaatgcatttcagttgatagggatgtcttcatgcctagacctctctggcttttttgagaaagaggaaatctctgagaggaagataagatttgcatcaaaactttcagttaaagatctgaatgagaggattgaggacactgtgacagaaatgggatttatagtccagaagaaaaatggcaaattgaaattgatgcgggagaacaagtcacacaaaactctaggctgcctctcagtggcagtagaggtgtttgaaataagcccatcactgtatgtagtagaattaaggaagtcttatggagatggttctgtatataaacagttatgcaagaaactattgaatgatttgggtgttcccccaaagcaagagctaatgagtgagctcagcagccaattagaagacatataa 1287 0.0 MVIMTKLGEKKNEREGMRLGKYELGRTLGEGNFGKVKIARNTDSDQPYAVKIIDKNKIIDLNITNQIKREIATLKLLRHPNVVRLYEASKGKLTEREGRKVFQQMIDGVSYCHTRGVFHRDLKLENVLVDNKGNIKITDFGLSALPQHLRADGLLHTTCGSPNYVAPEVLANKGYHGATSDTWSCGVILYVILVGYLPFDDRNIVVLYQKILKGDVQIPAWLSPGARNMIKRILDPNPETRITMAEIKEDPWFKKGYIPANPEDEDVYVDNEAFPIREETNEVEQRNSGSATLINAFQLIGMSSCLDLSGFFEKEEISERKIRFASKLSVKDLNERIEDTVTEMGFIVQKKNGKLKLMRENKSHKTLGCLSVAVEVFEISPSLYVVELRKSYGDGSVYKQLCKKLLNDLGVPPKQELMSELSSQLEDI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03879 428 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 15 397 - -
Pste6g03879 428 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Pste6g03879 428 FunFam Non-specific serine/threonine protein kinase 291 412 - -
Pste6g03879 428 FunFam Aurora kinase A 14 93 - -
Pste6g03879 428 Pfam NAF domain 293 350 IPR004041 GO:0007165
Pste6g03879 428 ProSiteProfiles NAF domain profile. 289 313 IPR018451 GO:0007165
Pste6g03879 428 SUPERFAMILY Protein kinase-like (PK-like) 19 262 IPR011009 -
Pste6g03879 428 Gene3D Transferase(Phosphotransferase) domain 1 13 294 - -
Pste6g03879 428 ProSiteProfiles Protein kinase domain profile. 22 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03879 428 SMART serkin_6 22 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g03879 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Pste6g03879 428 CDD CIPK_C 295 406 - -
Pste6g03879 428 Gene3D Kinase associated domain 1, KA1 295 410 - -
Pste6g03879 428 FunFam Non-specific serine/threonine protein kinase 84 260 - -
Pste6g03879 428 Pfam Protein kinase domain 89 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03879 Pste-Chr6 28016138 28023245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03879 88 419 CBL-interacting serine-threonine protein kinases AT3G17510 67.560 5.35e-158 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pste6g03879 Pkinase 7.7e-44 CL0016