Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03872 atggaaggtgatataagtgtgaaccgtgattctaacaaaaatcaagactctaataggagcgtggccaaagatgaacccgccaaatcagtacccttatacaagcttttctcgtttgctgattctttcgatcacttgctgatgtttgtggggactgttggtgctattgggaatggaatctccatgcccttaatgactttgatatttggggatatgatcaatgcatttggaggatccaataacacagacgaagttgttgatgaagtttccaaggtatctctgaaatttgtatacttggctgcgggtacctttgttgcatctcttttgcagttgacatgctggatgatcactggggagaggcaagctgcaagaattagaggtttataccttcgaacaattttgaggcaagatgtcagcttctttgacaaagagactaatactggcgaggttgttggaaggatgtcaggtgatactgttcttattcaagaggccatgggtgagaaggtgggacagttcatacagttaatagcaactttcattggaggatttgtcgtagcattcattaagggatggcttctaactgttgtcatgctatcatgtattccacttcttgtcttgtctggggctatgatgagcctcgttattacaaaagcgtcctccaaggggcaagctgcttattctacagcagcaagtatagtagagcagacaatcggttctatccgaactgttgcatcattcacaggggagaggctagctattgctaaatacaaccagtccttagttaagtcgtacatgactggagtgcaagaggcactagcttctggtttgggttttggtgcactctactttattgtcatcagcagttatgctttggcaatatggtttggtgccaaaatgataatagaaaaaggatacacaggaggagaggttgtgaccgtaatatttgcagtattgactggctccatgtctcttgggcaggcatctccaagcttgagtgcttttgctgcaggacaagctgcagcctttaagatgtttgaaacaattaaaaggaaaccagaaattgatgcttacgacaccactggtcgcaagcttgatgacattcgtggcgatatagagcttagggaggtttgctttagttatcctacaagacctgatgaactggtattcaatggattttctctttcaataccaagtggcactactgcagctttggtaggacaaagtgggagtggaaaatctacagttgttagtttgattgagagattttatgatccacaatctggttcggtactcattgatggagtcaaccttaaagaatttcaactgaaatggatcagacagaaaattggcctagtcagccaggaaccagttctcttcacttgtagcattaaagagaatattgcctatggaaaggatggagcaactgatgaagaaatcagagctgcagccgaacttgctaatgctgcaaaatttatagataaacttcctcagggactagatacaatggttggcgagcatggtactcagctgtctgggggtcaaaagcagagagtggcaatagctagagcaattttgaaagatccaagaatcctacttctggatgaagctacaagtgcactagatgctgaatctgagagagttgtacaggaggcattggacagaataatgataaacagaacaactgtcattgtagctcaccgcttgagtactataaggaatgccgatacaattgctgttattaatcaaggaaaaatagttgaaagagggtcacatgctgagctcaccaaagattctgaaggagcctatagtcagctcattagactacaagaaattaagaggtcagaacagaacatagacgacaaagacaaagtagacagtatagtgctttctggaagacattcaagtaaaaggtctttcttacggtctataagccaggagtcattgggagttggaaatagtggacgtcattcattctcagcatcatttggtgtgcccacatctgttggcatcatagaatctgcaggtgaagggcctcaagatcctcccacaacagcttcttcaccaccagatgtgcctcttagtcgcctggcttccctaaacaagccagagattccagtgttactgctggggactgtcgctgcagtaataactggagtaatattgcctgtttttggtctcttactttcaaaaatgataagtatcttctatgagcaagatcatgatgaacttcgtaaagattcaaaagtttgggcattaatatttgttgcccttggtgtggtttgtttactagtttatccagccaggttctacctttttggtgttgctggtggtaagttgatccaaaggattagggaaatgtgttttgagaaagtagttcacatggaagtaagttggtttgatgaagctgagcattcaagtggagcaattggagcaaggctctctactgatgcagcttctgttagagctttggtaggggatgcacttggtttgctggttcaaaatattgccgcagcagtagctggcttagtaattgcctttgcagcgagctggcagcttgcccttatcatccttgctttggtgcctctacttggagtaaatggatatgtgcaattcaagttcctgaaagggtttagtgcagattcaaagaaattgtatgaggaagcaagtcaagtggcgaatgatgctgtggggagtataagaacagttggttctttctgtgctgaagagaaggtgatggaattataccaggaaaaattttatgcaaccagtttttacgccggagctcgactggtagaggatggaaaatcaacgttctccgatgtgttccgggtcttttttgctctcagtatggcagctataggaatctctcaatctggttctttggtccctgattcaagtaaagcaaaaggtgccgctgcttcaatatttgccattcttgaccgaaaatcacaaatagacccaagcgatgattctggactgacactggaagaagtcaagggagagattgaacttaagcatgtcagtttcaagtatcctaccagacccgatgttcaaatattcagagatcttagtttgaccattcactgcggcaagacagtagcattggttggagaaagtggaagtggaaaatcaacagtgatttcgttactacaaagattttatgatccagactcaggtcacatcacactggatggaaaagaaattcaaaggatgcaagttaaatggctgagaaaacagatggggctggtgagccaagagccagtgctgtttaatgacaccatccgggccaatattgcatatggaaaaggagatgcaactgaggcagaaattatagctgcagctgaattggcaaacgcccataagttcattagtagtttgcagaagggttatgacacgatagtaggggagcgaggagttcaattatctgggggacagaagcagcgggtggcaattgcacgagctatagtgaagaatccaaaagtattacttctagatgaagccacaagtgcacttgatgctgagtctgaaagagtggttcaggatgcactagaccgtgttatggtggaccgaaccactatagtagtggctcataggttatcaaccattaagggtgcggatttaattgcagtggttaaaaatggggtgatagcagagaagggaaagcatgaagcattactcaacaagggaggtgattatgcttccttagtagcattgcatacaagcgcttcttctacatcttag 3738 0.0 MEGDISVNRDSNKNQDSNRSVAKDEPAKSVPLYKLFSFADSFDHLLMFVGTVGAIGNGISMPLMTLIFGDMINAFGGSNNTDEVVDEVSKVSLKFVYLAAGTFVASLLQLTCWMITGERQAARIRGLYLRTILRQDVSFFDKETNTGEVVGRMSGDTVLIQEAMGEKVGQFIQLIATFIGGFVVAFIKGWLLTVVMLSCIPLLVLSGAMMSLVITKASSKGQAAYSTAASIVEQTIGSIRTVASFTGERLAIAKYNQSLVKSYMTGVQEALASGLGFGALYFIVISSYALAIWFGAKMIIEKGYTGGEVVTVIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRKLDDIRGDIELREVCFSYPTRPDELVFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQSGSVLIDGVNLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMINRTTVIVAHRLSTIRNADTIAVINQGKIVERGSHAELTKDSEGAYSQLIRLQEIKRSEQNIDDKDKVDSIVLSGRHSSKRSFLRSISQESLGVGNSGRHSFSASFGVPTSVGIIESAGEGPQDPPTTASSPPDVPLSRLASLNKPEIPVLLLGTVAAVITGVILPVFGLLLSKMISIFYEQDHDELRKDSKVWALIFVALGVVCLLVYPARFYLFGVAGGKLIQRIREMCFEKVVHMEVSWFDEAEHSSGAIGARLSTDAASVRALVGDALGLLVQNIAAAVAGLVIAFAASWQLALIILALVPLLGVNGYVQFKFLKGFSADSKKLYEEASQVANDAVGSIRTVGSFCAEEKVMELYQEKFYATSFYAGARLVEDGKSTFSDVFRVFFALSMAAIGISQSGSLVPDSSKAKGAAASIFAILDRKSQIDPSDDSGLTLEEVKGEIELKHVSFKYPTRPDVQIFRDLSLTIHCGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIQRMQVKWLRKQMGLVSQEPVLFNDTIRANIAYGKGDATEAEIIAAAELANAHKFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKVLLLDEATSALDAESERVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLNKGGDYASLVALHTSASSTS 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03872 1245 FunFam ABC transporter B family member 9 968 990 - -
Pste6g03872 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 606 IPR003439 GO:0005524
Pste6g03872 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03872 1245 SMART AAA_5 397 583 IPR003593 GO:0016887
Pste6g03872 1245 SMART AAA_5 1028 1220 IPR003593 GO:0016887
Pste6g03872 1245 MobiDBLite consensus disorder prediction 670 691 - -
Pste6g03872 1245 Pfam ABC transporter 389 537 IPR003439 GO:0005524
Pste6g03872 1245 ProSitePatterns ABC transporters family signature. 1140 1154 IPR017871 GO:0005524|GO:0016887
Pste6g03872 1245 Gene3D - 991 1244 IPR027417 -
Pste6g03872 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 990 1237 IPR027417 -
Pste6g03872 1245 MobiDBLite consensus disorder prediction 1 23 - -
Pste6g03872 1245 Gene3D - 394 617 IPR027417 -
Pste6g03872 1245 FunFam ABC transporter B family member 1 360 609 - -
Pste6g03872 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 608 IPR027417 -
Pste6g03872 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1001 1237 IPR003439 GO:0005524
Pste6g03872 1245 Gene3D ABC transporter type 1, transmembrane domain 48 393 IPR036640 GO:0005524|GO:0016020
Pste6g03872 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 707 918 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03872 1245 CDD ABC_MTABC3_MDL1_MDL2 1001 1235 - -
Pste6g03872 1245 Gene3D ABC transporter type 1, transmembrane domain 670 989 IPR036640 GO:0005524|GO:0016020
Pste6g03872 1245 PANTHER ABC TRANSPORTER B FAMILY 8 763 IPR039421 -
Pste6g03872 1245 CDD ABC_MTABC3_MDL1_MDL2 370 608 - -
Pste6g03872 1245 FunFam ABC transporter B family member 1 686 918 - -
Pste6g03872 1245 FunFam ABC transporter B family member 1 991 1239 - -
Pste6g03872 1245 SUPERFAMILY ABC transporter transmembrane region 694 985 IPR036640 GO:0005524|GO:0016020
Pste6g03872 1245 Pfam ABC transporter transmembrane region 47 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03872 1245 Pfam ABC transporter transmembrane region 706 917 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03872 1245 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 331 - -
Pste6g03872 1245 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524|GO:0016887
Pste6g03872 1245 SUPERFAMILY ABC transporter transmembrane region 34 354 IPR036640 GO:0005524|GO:0016020
Pste6g03872 1245 CDD ABC_6TM_Pgp_ABCB1_D2_like 696 984 - -
Pste6g03872 1245 FunFam ABC transporter B family member 9 34 366 - -
Pste6g03872 1245 Pfam ABC transporter 1020 1168 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03872 Pste-Chr6 27927569 27933683 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03872 670 1245 Calmodulin-binding Proteins AT2G36910 38.049 1.03e-121 406