Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03870 atgcttgtctccaagtgtgacaagaacaatactttggagaaattgttcgaggaagcaagtcaagtggccagtgatgctgtggggagtataagaacggtcgcttcgttctgttctgaagaaaaggtgatggaattataccagaaaaaatgtgaaggacctattaaggcaggaataaggcaagggatagtaagtggatttagttttggactatcattctttatgctatatgcagtttatgcaaccagtttttatgctggagctcgactgataaaggctggaaaatcatcatatccacaagttttccgggtattttttgctctcagtatgacagctataggaatatctcattctggatctttggtccttgattcatctaaagcaaaagctgctgttgcttcaatatttgccattcttgaccgaaagtcacaaatagacccaagtgatgactctggactgacactagaagaagtcaaaggagagattgaacttaagcatgtgagtttcaactatccaaccagacctaatgttaaaatactcaaagatctttgcatgaccattcatagcggcaagacagtagcacttgttggagaaagtggaagtggaaaatcaacagtaatcgtattactacaaagattttatgatccagactcaggtcacattaccctggatggaaaagaaattcacaggatgcaggttaaatggctaagacaacagatgggtctggtgagccaagagcctgtgctatttaatgacaccatccgagccaatattgcatatggaaaaagagatgcaaccgaggcagaaattatagctgcagctgaattggcaaacgcccataagttcattagtagtttgaagaagggttatgacacgacagtaggggagcgaggagttcaattatctgggggacagaagcagcgggtggcaattgcacgagctatagtgaagaatccaaaaatattacttctagatgaagccacaagtgcacttgatgctgagtctgaaagagtggttcaggatgcactagaccgtgttatggtggaccgaaccacaatagtagtggctcataggttatcaactattaagggtgcggatttaattgcagtaattaaaaacggaaagatagcagagaagggaaagcatgaagcattactcaacaagggaggtgactatgcttccttagtagcattgcatacaagtgcttctacattttag 1215 0.0 MLVSKCDKNNTLEKLFEEASQVASDAVGSIRTVASFCSEEKVMELYQKKCEGPIKAGIRQGIVSGFSFGLSFFMLYAVYATSFYAGARLIKAGKSSYPQVFRVFFALSMTAIGISHSGSLVLDSSKAKAAVASIFAILDRKSQIDPSDDSGLTLEEVKGEIELKHVSFNYPTRPNVKILKDLCMTIHSGKTVALVGESGSGKSTVIVLLQRFYDPDSGHITLDGKEIHRMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKRDATEAEIIAAAELANAHKFISSLKKGYDTTVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESERVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVIKNGKIAEKGKHEALLNKGGDYASLVALHTSASTF 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03870 404 Gene3D ABC transporter type 1, transmembrane domain 15 400 IPR036640 GO:0005524|GO:0016020
Pste6g03870 404 SMART AAA_5 188 381 IPR003593 GO:0016887
Pste6g03870 404 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 161 397 IPR003439 GO:0005524
Pste6g03870 404 Pfam ABC transporter transmembrane region 14 111 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03870 404 PANTHER ABC TRANSPORTER B FAMILY 13 397 IPR039421 -
Pste6g03870 404 CDD ABC_MTABC3_MDL1_MDL2 161 395 - -
Pste6g03870 404 Gene3D - 151 399 IPR027417 -
Pste6g03870 404 SUPERFAMILY ABC transporter transmembrane region 14 145 IPR036640 GO:0005524|GO:0016020
Pste6g03870 404 ProSitePatterns ABC transporters family signature. 300 314 IPR017871 GO:0005524|GO:0016887
Pste6g03870 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 397 IPR027417 -
Pste6g03870 404 Pfam ABC transporter 179 328 IPR003439 GO:0005524
Pste6g03870 404 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 14 126 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03870 404 FunFam ABC transporter B family member 9 128 150 - -
Pste6g03870 404 FunFam ABC transporter B family member 1 151 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03870 Pste-Chr6 27916008 27918794 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03870 9 401 Calmodulin-binding Proteins AT2G36910 46.329 1.30e-118 372