Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03869 atggaaggtgatatgagtgagaacgggaagaggagcgaggccaaagatgaacccgccaaatcagtacccttatacaagcttttctcgtttgctgatcctttggatcacttgctgatgtttatggggactgttggtgctattgggaatggaatctccatgcccgtaatgactttgatatttggaaatatgatcaatgcatttggagaattcagtaacacagacgaaattctccatgaagtttccaagttgtctctgaatttcgtatacttggctgtgggtacctgtgttgcatcacttctgcagttgacttgctggatgatcactggggaaagacaagctgcaagaattagaggtttataccttgaaacgattttgagacaagatgtggccttctttgacaaagagactaatactggcgaggttgttggaaggatgtcaggtgatacggttcttattcaagatgccatgggtgagaaggtgggaaagctcatacagttactagcagcattcattggagggtttgtcatggcattcatcaagggatggcttctaactgttgtcatgctatcatgttttccacttcttgtcttggctgtggctatagtgaacctccgggttacaaaagcgtcatccaagggacaagctgcttattctgcagcagcaagtatagtagagcagaaaattagttccatccgaactgttgcatcattcacaggggagaaggtagctattgctaaatacaatcactccttagtcaaggcgtacaagagtggagtgcaagaggcattagcttctggtttgggtatgggtgtactccactttgtttttttctccagttacgctttggcagtatggtttggtgccaaattgattatagaaaaaggattaacaggaggagcgattgtgactgtaatattttctgtagtgactggctccacgtctcttggacacgcatctccaagcttgagtgctttagctgctggacaagctgcagcctttaagatgtttgaaacaattaaaaggaaaccagaaattgatgcttacgacaccactggtcgcaagcttgatgacattcgtggcgatatagagcttagggaggtttgctttagttatcctacaagacctgatgaactggtattcaatggattttctctttcaataccaagtggcactactgcagctttggtaggacaaagtgggagtggaaaatctacagttgttagtttgattgagagattttatgatccacaatctgggtgggtactcattgatggagtcaaccttagagaatttcaactgaaatggatcagacagaaaattggcctagtcagccaggaaccagttctcttcacttgtagcattaaagagaatattgcctatggaaaggatggagcaactgatgaagaaattagagctgcagccgaacttgctaatgctgcaaaatttatagataaacttcctcaggcaagttctccctcatgtggatatagaaactgcttagtgaaaatagcaagactagatacaatggttggcgagcgtggtactcagctgtctgggggtcaaaagcaaagagtggcaatagctagagcaattttgaaagatccaagaattctacttctagatgaagctacaagtgcacttgatgctgagtctgagagagttgtacaggaggcattggacagaataatgataaacagaacaactgtgattgtagcccaccgcttgagtaccataaggaatgccgatacaattgctgttattcatcaaggaaaaatagttgaaagagggtcacatgctgagctcaccaaggatcctgaaggagcctatagccagctcatcaggctacaagaaattaagaggtcagaacagaatgtagacgacagagacaaagaagagagtatagtactttctggaagacattcaagtagaaggtctttcttacaatctataagccaagagtcatcgggagatggaaatagtggacatcatgcatcatttgttgtgcccacatctgttggcatcacagaatctgcaggtgaagggcctcaagatcctcccacagcagcttcttcaccaccagatgtgcctcttcatcgcctggtttccctaaacaagccagagattccagtgttggtgatggggactgtagttgcagtgataactggagcaataatgcctgtttttggtctcttactttccctaatgtcaagcattttctatgagccagctcatgaacttcgtaaagattcaaaagtttgcgcattagtatttgttgcgcttggtgctgtagcatccctagctcatccggctaggctctacctgtttggtgttgctggtggtaagttgatccaaaggatcaggaaaatgtgttttgagaaagtagttcacatggaagtaagttggtttgatgaagctgagcattcaagtggagtaattggagcaaggctctctgccgatgcagcttctgttagaactttggttggggatgcacttagtttgttggttcaaaatattgccacagcagtagctggcttagtaatggcatttggatcgagctggcagcttgcgcttctaatccttgctttggtgcctctactaggattaaatggatatgtgcaatcaaagctcctgaaaggatttggtgcagattcaaaggtttgttcttga 2667 0.0 MEGDMSENGKRSEAKDEPAKSVPLYKLFSFADPLDHLLMFMGTVGAIGNGISMPVMTLIFGNMINAFGEFSNTDEILHEVSKLSLNFVYLAVGTCVASLLQLTCWMITGERQAARIRGLYLETILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKLIQLLAAFIGGFVMAFIKGWLLTVVMLSCFPLLVLAVAIVNLRVTKASSKGQAAYSAAASIVEQKISSIRTVASFTGEKVAIAKYNHSLVKAYKSGVQEALASGLGMGVLHFVFFSSYALAVWFGAKLIIEKGLTGGAIVTVIFSVVTGSTSLGHASPSLSALAAGQAAAFKMFETIKRKPEIDAYDTTGRKLDDIRGDIELREVCFSYPTRPDELVFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQSGWVLIDGVNLREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQASSPSCGYRNCLVKIARLDTMVGERGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHAELTKDPEGAYSQLIRLQEIKRSEQNVDDRDKEESIVLSGRHSSRRSFLQSISQESSGDGNSGHHASFVVPTSVGITESAGEGPQDPPTAASSPPDVPLHRLVSLNKPEIPVLVMGTVVAVITGAIMPVFGLLLSLMSSIFYEPAHELRKDSKVCALVFVALGAVASLAHPARLYLFGVAGGKLIQRIRKMCFEKVVHMEVSWFDEAEHSSGVIGARLSADAASVRTLVGDALSLLVQNIATAVAGLVMAFGSSWQLALLILALVPLLGLNGYVQSKLLKGFGADSKVCS 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03869 888 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 614 IPR003439 GO:0005524
Pste6g03869 888 SMART AAA_5 389 591 IPR003593 GO:0016887
Pste6g03869 888 Pfam ABC transporter 381 545 IPR003439 GO:0005524
Pste6g03869 888 SUPERFAMILY ABC transporter transmembrane region 20 346 IPR036640 GO:0005524|GO:0016020
Pste6g03869 888 Gene3D ABC transporter type 1, transmembrane domain 26 623 IPR036640 GO:0005524|GO:0016020
Pste6g03869 888 Gene3D ABC transporter type 1, transmembrane domain 678 887 IPR036640 GO:0005524|GO:0016020
Pste6g03869 888 MobiDBLite consensus disorder prediction 645 694 - -
Pste6g03869 888 FunFam ABC transporter B family member 9 26 358 - -
Pste6g03869 888 MobiDBLite consensus disorder prediction 645 672 - -
Pste6g03869 888 SUPERFAMILY ABC transporter transmembrane region 696 880 IPR036640 GO:0005524|GO:0016020
Pste6g03869 888 ProSitePatterns ABC transporters family signature. 517 531 IPR017871 GO:0005524|GO:0016887
Pste6g03869 888 Pfam ABC transporter transmembrane region 39 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03869 888 Pfam ABC transporter transmembrane region 711 880 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03869 888 FunFam ABC transporter B family member 1 352 617 - -
Pste6g03869 888 PANTHER ABC TRANSPORTER B FAMILY 4 619 IPR039421 -
Pste6g03869 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 616 IPR027417 -
Pste6g03869 888 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 323 - -
Pste6g03869 888 Gene3D - 352 617 IPR027417 -
Pste6g03869 888 CDD ABC_MTABC3_MDL1_MDL2 362 616 - -
Pste6g03869 888 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 712 888 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03869 888 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03869 Pste-Chr6 27909088 27913280 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03869 13 883 Calmodulin-binding Proteins AT2G36910 41.477 0.0 646