Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03866 atggcagatgataacttgaatgtagatcctaacagcaagaaagattcaaagaagagtgaggccaaagatgaaactgccaaaactgtacccttatacaagcttttctcatttgctgatcctttggatcatttattgatgtttttcgggactgtgggtgctatcgggaatggagtctctgcgcccttgatgagtcttatatttggaaatatgatcaatgcatttggaggaacaaaaaactctaaggaagttgttgatgaagtttccaaggtgtctctgaaatttgtatacttggctgcgagtacctttgttggatcatttttgcagttgacatgctggatgatcactggggagaggcaagctgcaagaatgagaggtttataccttcgaacaattttgaggcaagatgtcagtttctttgataaagagactaatacgggcgaggttgttggaaggatgtcaggtgatactgttcttattcaagatgccatgggtgagaaggtaggacagttcttacagttaatggcatctttcgttggaggttttgttatagcattctgcagcggatggcttctagctgttatcatgctatctagtattccatttattgttttgggtggtgctatgactggcatgattatttcaaaagcatcatccagtgcacaagcagcttattctatagcagcaactgtagtagaacagactataggttctatcagaactgttgcatcattcactggggagaagcaagctatagccaaatataatcagtccttaatcaaagcttacaaggcgggagtgcaacaggcactagtttctggtcttgggtttggttctctcttttttgttttaaactgcagttatggtttggcaatgtggtttggtgcaaaaatggtaatagagaaaggatatacagggggagaggttgtgacagtgattatgactgtattgactggctccatgtctcttggtcaggcatctccaagcttgagtgcttttgcagctggaagggctgcagcctttaagatgtttcaaacaattaaaaggaaaccagaaattgattcttatgacactactggtcagcagcttgatgacattcatggagatattgaacttagggaggtttgcttcagttatcctacaagacctgatgaactgatattcaatggattttctatttcaataccaagcggcactacgacagctttggtaggagaaagtgggagtgggaaatccacagttgttagtttgatagagagattttatgatccacaggcaggtgaagttctcattgacagcatcaacctcaaagaatttcaattgaaatggatcagacagaaaataggcctagttagccaggaaccagttcttttcacttgcagtattaaagagaatatttcctatggcaaggatggtgcaactattgaagaaatcagagctgcagcagaactagctaatgctgccaaatttatagataaacttcctcagggactagacacaatggttggggagcatggaacacagctctcggggggtcaaaaacaaagagttgcaatagcaagagcaattttgaaaaacccaagaatcctacttcttgatgaagccacaagtgcccttgatgctgaatctgagaacattgtgcaggaggcattggacagaataatgatagaccgaacaactgtcattgtatcccatcgcttaagtactataaggaatgctgatagcattgctgttattcaccaaggaaagatagttgaaagaggttcacatgctgagctcaccaaggatcctaatggagcgtatagccagctcattagactgcaagaaattaaagggtcagaacaaaatgctgaaaatgacacaggcaagctaggaagtatagtccattctgaaagacaatcaagtaaaagatctttcttgcaatctataagccaaatgtcatcaggagtaggaagcagtggtaactcattctcagcatcacatggtgtgccaacgacggttgacttcttggaacctgcaagtggagggcctcaaacaccttcaacagtttcttcacccccagaagtgccactctatcgcttggcatatttaaacaagcctgagattccagtcttactgttaggggttatagctgcaggaataaacggactaatgttacccattgtttcactctttatatccaaaacgataagtattttatatgagccagtggatgaaattcgtaaagattcaaaacttttggcattactatatgttgctgttggcgtggcatcatttatcttgcctctgtttagattctaccttttcggagttgctggttgtaagttgataaaaaggattcggaaaatgtgttttgagaaggtacttcacatggaaattagttggttcgatgaaactgaacattcaagtggagcaattggagcaagactctcttctgatgcagcaactattcgatctttggttggagatgcacttggtttactggttcaaaatattgcaacagcagtaggtggcttggttattgcttttgaagcatgctggcagcttgcaattttaatgcttgctttggcacctctgttaggactaaatggatacgtgcaattcaagttcttgaaaggattcagcgaagatgcaaagaaactgtatgaggaagcaagtcaagtggcaaatgatgctgtagggagtataagaacagttgcttctttctgtgctgaaaagaaggtcatggatttgtaccaggaaagatctgaaggaccaattaagacgggcatacgacgggggataataagtggaattagttttggactatcattctttgtgttgtgtgcagtttatgcatgtagtttttatgtaggtgctcgacttatagaggatggaaaatcaacattctcagatattttccgtgtattttttgcactcagcatggcagccatgggaatatctcaatctagcactttggtccctgattcaaccaagtcaaaaagtgctgcggcttctgtatttgctattcttgatcgaaagtcacagattgaccccattgaggaatctggattgaaattggaagaagttaagggagatattgaatttaagcatgtcaatttcaagtatcccaccagacctgatgttgaaatatttagagatctttgcttgagcattcgtggtggcaagacagttgcattggttggagaaagtggaagtggaaaatcaacagtgatttcattattacaaagattttatgatccagactcaggtcacattacactggatggaaaagaaatccaaaggctgcaagttaaatggctaagacaacagatgggcctagtgagccaagagcctgtgctgtttaatgacaccatcagagccaatattgcatatggaaagggtggagatgcaacagaggcagaaattattgctgcagcagaactcgcaaatgctcacaatttcactagtagtttgttggagggttatgacacaatagtaggggagagagggattcaactatcaggagggcagaagcagcgggtggcaattgcacgagccatagtgaagaatccaaaaatattacttctagatgaagccacaagtgcacttgatgctgagtctgaaagagtggttcaggatgcactagaccgtgttatggtggaccgaaccactatagtagtagctcataggttatccactgtgaagggtgcagatttaattgcagtagttaaaaacggggtgatagcagagaagggaaagcatcaagtattactcaaaaagggaggtgactatgcttccttagtagcattgcacacaacaacttctacatcttag 3813 0.0 MADDNLNVDPNSKKDSKKSEAKDETAKTVPLYKLFSFADPLDHLLMFFGTVGAIGNGVSAPLMSLIFGNMINAFGGTKNSKEVVDEVSKVSLKFVYLAASTFVGSFLQLTCWMITGERQAARMRGLYLRTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFLQLMASFVGGFVIAFCSGWLLAVIMLSSIPFIVLGGAMTGMIISKASSSAQAAYSIAATVVEQTIGSIRTVASFTGEKQAIAKYNQSLIKAYKAGVQQALVSGLGFGSLFFVLNCSYGLAMWFGAKMVIEKGYTGGEVVTVIMTVLTGSMSLGQASPSLSAFAAGRAAAFKMFQTIKRKPEIDSYDTTGQQLDDIHGDIELREVCFSYPTRPDELIFNGFSISIPSGTTTALVGESGSGKSTVVSLIERFYDPQAGEVLIDSINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENISYGKDGATIEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKNPRILLLDEATSALDAESENIVQEALDRIMIDRTTVIVSHRLSTIRNADSIAVIHQGKIVERGSHAELTKDPNGAYSQLIRLQEIKGSEQNAENDTGKLGSIVHSERQSSKRSFLQSISQMSSGVGSSGNSFSASHGVPTTVDFLEPASGGPQTPSTVSSPPEVPLYRLAYLNKPEIPVLLLGVIAAGINGLMLPIVSLFISKTISILYEPVDEIRKDSKLLALLYVAVGVASFILPLFRFYLFGVAGCKLIKRIRKMCFEKVLHMEISWFDETEHSSGAIGARLSSDAATIRSLVGDALGLLVQNIATAVGGLVIAFEACWQLAILMLALAPLLGLNGYVQFKFLKGFSEDAKKLYEEASQVANDAVGSIRTVASFCAEKKVMDLYQERSEGPIKTGIRRGIISGISFGLSFFVLCAVYACSFYVGARLIEDGKSTFSDIFRVFFALSMAAMGISQSSTLVPDSTKSKSAAASVFAILDRKSQIDPIEESGLKLEEVKGDIEFKHVNFKYPTRPDVEIFRDLCLSIRGGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIQRLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHNFTSSLLEGYDTIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESERVVQDALDRVMVDRTTIVVAHRLSTVKGADLIAVVKNGVIAEKGKHQVLLKKGGDYASLVALHTTTSTS 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03866 1270 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Pste6g03866 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03866 1270 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Pste6g03866 1270 CDD ABC_6TM_Pgp_ABCB1_D2_like 694 1009 - -
Pste6g03866 1270 Gene3D - 367 622 IPR027417 -
Pste6g03866 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1026 1263 IPR003439 GO:0005524
Pste6g03866 1270 Gene3D - 1016 1269 IPR027417 -
Pste6g03866 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Pste6g03866 1270 ProSitePatterns ABC transporters family signature. 1166 1180 IPR017871 GO:0005524|GO:0016887
Pste6g03866 1270 FunFam ABC transporter B family member 1 359 608 - -
Pste6g03866 1270 Pfam ABC transporter transmembrane region 704 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03866 1270 Pfam ABC transporter transmembrane region 46 320 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03866 1270 SUPERFAMILY ABC transporter transmembrane region 692 1006 IPR036640 GO:0005524|GO:0016020
Pste6g03866 1270 FunFam ABC transporter B family member 1 684 992 - -
Pste6g03866 1270 CDD ABC_MTABC3_MDL1_MDL2 1026 1261 - -
Pste6g03866 1270 Pfam ABC transporter 388 536 IPR003439 GO:0005524
Pste6g03866 1270 MobiDBLite consensus disorder prediction 8 22 - -
Pste6g03866 1270 FunFam ABC transporter B family member 9 33 365 - -
Pste6g03866 1270 MobiDBLite consensus disorder prediction 1 22 - -
Pste6g03866 1270 FunFam ABC transporter B family member 1 1016 1265 - -
Pste6g03866 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 607 IPR027417 -
Pste6g03866 1270 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 330 - -
Pste6g03866 1270 Pfam ABC transporter 1046 1194 IPR003439 GO:0005524
Pste6g03866 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 705 991 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03866 1270 SUPERFAMILY ABC transporter transmembrane region 27 353 IPR036640 GO:0005524|GO:0016020
Pste6g03866 1270 Gene3D ABC transporter type 1, transmembrane domain 92 1000 IPR036640 GO:0005524|GO:0016020
Pste6g03866 1270 PANTHER ABC TRANSPORTER B FAMILY 9 610 IPR039421 -
Pste6g03866 1270 SMART AAA_5 1053 1226 IPR003593 GO:0016887
Pste6g03866 1270 SMART AAA_5 396 582 IPR003593 GO:0016887
Pste6g03866 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1016 1263 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03866 Pste-Chr6 27879884 27886203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03866 20 1269 Calmodulin-binding Proteins AT2G36910 45.159 0.0 1053