Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03864 atggcaggggacatggacttgaatggagatcctaacagcaagcaagactcaaagaagagcgacgccaaagatgaaactgcaaaaacaatacccttatacaagcttttctcgtttgctgatcctttggatcatttattgatgattttgggaagtgttggtgctattgggaatggaatctccttgcccttaatgactctgctattcggaaatatgatcaatgcttttggaggaaccaaaaacaccaacgaagtagttgatgaagtttccaaggtgtctttgaaatttgtgtacttggctgtgggtaccttttttgcatcacttttgcagttggcttgctggatgatcactggggagagacaagctgcaagaattagaggcttataccttcaaacaattttgaggcaagatgttaccttctttgataaggaaactagaactggagaggttgttggaaggatgtcaggtgatactgttcttattcaagatgccatgggtgagaaggtaggacagttcatacagttcatggctagtttctttggaggttttgtagtagcattcataaggggatggcttctaacagttgttatgctatctactataccacctcttgttgtgtgtggcgctacgataggcctggttatttccaaagcatcatcaagggggcaagcagcttattccattgctgcaactgtagtagagcagacaataggctctatcagaactgttgcatcattcactggggagaagcaagctatagtgagatataatcagtccttaatcaaagcttacaaagctggagtacaagaagcactagcttctggttttgggtttggttctctttattttgttttcacctgcagttatggtttggctacatggtttggtgcaaaaatgataatagagaaaggatatacaggaggagaggttgtgacagtaattatggcagtattgactggctccatgtctcttggacaggcatctccaagcttgagtgctttcgctgctggacaagctgcagcctttaagatgtttgaaacaattaaaagaaaaccagaaattgatgcttacgacactacaggtcggaagcttgatgacattcgtggtgatattgagcttagggaggtttgctttagttatcctacaaggcctgatgaactgatattcaatggattttctatttcaataccaagcggcactacgacagctttggcaggtgaagttctcattgacagcatcaacctcaaagaatttcaattgaaatggatcagacagaaaataggcctagttagccaggaaccagttcttttcacttgcagtattaaagagaatatttcctatggcaaggatggtgcaactgttgaagaaatcagagctgcagcagaactagctaatgctgccaaatttatagataaacttcctcagggactagacacaatggttggagagcatggaacacagctctcggggggccaaaaacaaagagttgcaatagcaagagcaattttaaaaaacccaagaatcctacttctggatgaagctacaagtgcccttgatgctgaatctgagaacattgtgcaggaggcattggacagaataatgatagaccgaacaacaatcattgtagcccatcgcttaagtactataaggaacgctgatagcattgctgttattcaccaaggaaagatagttgaaagaggttcacatgctgagctcaccaaggatcctactggagcctatagccagctcattagactgcaagaaattaaagggtcagaacataatgctgcaaatgacacagacaagctagaaagtgtagtccattctggaagacaatcaagtcaaagatcgttcttacgatctataagccaacgatcatcaggagttggaagcagtggtcgtaactcattctcagcatcccatggtttgcccacaatggttggcttcttggaacctgcaaatggaggagctcaagctacacctccttcaacagtttcttcaccaccggaagtgccactctatcgcctggcatatttaaacaaacctgagattctagtcttattgctaggggctatagcggcaacaataaatggagtattattacccatcgttgcactctttatgtccaaaatgataagtattttctacgagccatttgatgaacttcggaaagattcaaaacattgggcattactttttgtcgcacttggtgtggtatcatttatcatgcctccatttaggttctacttttttggagttgctggtggtaagttgatcaaaaggattcgaaagatgtgtttcgagaaagtagttcatatggaagtaagttggtttgatgaagctgaacactcaagtggagcaattggagcaaggctctcttctgatgcagccgctgttcgagctttggttggggatgcacttggtttgctggttcaaaatattgctacagcagtaggtggcttggtaattgcttttgaggcaagctggcagcttgcttttatagtgcttgttttggcacctttattaggactaaatggatacgtgcaattcaaattcttaaaaggattcagtgcagatgcaaagaaactgtatgaggaagcaagtcaagtagcaaatgatgctgtagggagtataagaacagttgcttctttctgtgctgaaaagaaggttatagaattataccaggataaattttatgcatgcactttttatgctggagctcgacttgtagaggatggaaaaacaacattctcagacgtctttcgtgtattttttgcactcagcatggcagctatgggaatctctcaatctggctctttggtccctgattcaactaactcaaaaagtgctgctgcttctgtatttgctattcttgatcgaaagtctcaaattgacccaagtgatgagtctggattggcattggaagaagtcaagggagaagttgaatttaaccatgttagtttcaggtatccaaccagacctgatattcaaatattcagcgatctttgcttaaccattcaaagtggcaagacagttgcactggttggagaaagtggaagtggaaaatcaacagtcatttcattgttacaaagattttatgatccagactcaggtcacattacactggatggaaaagatatccaaaggctgcaagttaaatggctaagacaacagatgggcctagtgagccaagagcctgtgctgtttaatgacaccatcagagccaatattgcatatggaaagggtggagatgcaacagaggcagaaataatagctgcagcagaactcgcaaatgctcacaacttcaccagcggtttgcaggagggttatgacacaatagtaggggagagagggattcaactatcagggggacagaagcagcgggtggcaattgcacgagctatagtgaagaatccaaaaatattacttctagatgaagccacaagtgcacttgatgccgaatctgaaaaagtcgttcaggatgcattagaccgtgttatggtgaaccgaaccacaatagtagtagctcataggttatcaactattaagggggcagatttaattgcagtagttaaaaatggggtgatagcagaaaagggaaggcatgaagcattactaaacaagggaggtgactatgcttccttagtagcattgcacacaactgcttctgcatcttag 3675 0.0 MAGDMDLNGDPNSKQDSKKSDAKDETAKTIPLYKLFSFADPLDHLLMILGSVGAIGNGISLPLMTLLFGNMINAFGGTKNTNEVVDEVSKVSLKFVYLAVGTFFASLLQLACWMITGERQAARIRGLYLQTILRQDVTFFDKETRTGEVVGRMSGDTVLIQDAMGEKVGQFIQFMASFFGGFVVAFIRGWLLTVVMLSTIPPLVVCGATIGLVISKASSRGQAAYSIAATVVEQTIGSIRTVASFTGEKQAIVRYNQSLIKAYKAGVQEALASGFGFGSLYFVFTCSYGLATWFGAKMIIEKGYTGGEVVTVIMAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRKLDDIRGDIELREVCFSYPTRPDELIFNGFSISIPSGTTTALAGEVLIDSINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENISYGKDGATVEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKNPRILLLDEATSALDAESENIVQEALDRIMIDRTTIIVAHRLSTIRNADSIAVIHQGKIVERGSHAELTKDPTGAYSQLIRLQEIKGSEHNAANDTDKLESVVHSGRQSSQRSFLRSISQRSSGVGSSGRNSFSASHGLPTMVGFLEPANGGAQATPPSTVSSPPEVPLYRLAYLNKPEILVLLLGAIAATINGVLLPIVALFMSKMISIFYEPFDELRKDSKHWALLFVALGVVSFIMPPFRFYFFGVAGGKLIKRIRKMCFEKVVHMEVSWFDEAEHSSGAIGARLSSDAAAVRALVGDALGLLVQNIATAVGGLVIAFEASWQLAFIVLVLAPLLGLNGYVQFKFLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEKKVIELYQDKFYACTFYAGARLVEDGKTTFSDVFRVFFALSMAAMGISQSGSLVPDSTNSKSAAASVFAILDRKSQIDPSDESGLALEEVKGEVEFNHVSFRYPTRPDIQIFSDLCLTIQSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKDIQRLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHNFTSGLQEGYDTIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVNRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGRHEALLNKGGDYASLVALHTTASAS 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03864 1224 Gene3D ABC transporter type 1, transmembrane domain 897 1220 IPR036640 GO:0005524|GO:0016020
Pste6g03864 1224 Pfam ABC transporter 398 515 IPR003439 GO:0005524
Pste6g03864 1224 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03864 1224 Gene3D - 405 599 IPR027417 -
Pste6g03864 1224 FunFam ABC transporter B family member 1 666 897 - -
Pste6g03864 1224 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 348 584 IPR003439 GO:0005524
Pste6g03864 1224 SUPERFAMILY ABC transporter transmembrane region 34 354 IPR036640 GO:0005524|GO:0016020
Pste6g03864 1224 Pfam ABC transporter 1000 1148 IPR003439 GO:0005524
Pste6g03864 1224 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 687 897 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03864 1224 MobiDBLite consensus disorder prediction 1 23 - -
Pste6g03864 1224 FunFam ABC transporter B family member 1 970 1219 - -
Pste6g03864 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 586 IPR027417 -
Pste6g03864 1224 SMART AAA_5 397 561 IPR003593 GO:0016887
Pste6g03864 1224 SMART AAA_5 1007 1200 IPR003593 GO:0016887
Pste6g03864 1224 FunFam ABC transporter B family member 28 403 588 - -
Pste6g03864 1224 FunFam ABC transporter B family member 9 34 366 - -
Pste6g03864 1224 CDD ABC_MTABC3_MDL1_MDL2 980 1215 - -
Pste6g03864 1224 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 980 1217 IPR003439 GO:0005524
Pste6g03864 1224 Gene3D ABC transporter type 1, transmembrane domain 34 359 IPR036640 GO:0005524|GO:0016020
Pste6g03864 1224 CDD ABC_6TM_Pgp_ABCB1_D2_like 676 963 - -
Pste6g03864 1224 ProSitePatterns ABC transporters family signature. 1120 1134 IPR017871 GO:0005524|GO:0016887
Pste6g03864 1224 Gene3D - 970 1219 IPR027417 -
Pste6g03864 1224 Gene3D - 360 404 IPR027417 -
Pste6g03864 1224 Pfam ABC transporter transmembrane region 47 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03864 1224 Pfam ABC transporter transmembrane region 686 896 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pste6g03864 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 970 1217 IPR027417 -
Pste6g03864 1224 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 331 - -
Pste6g03864 1224 SUPERFAMILY ABC transporter transmembrane region 674 964 IPR036640 GO:0005524|GO:0016020
Pste6g03864 1224 ProSitePatterns ABC transporters family signature. 487 501 IPR017871 GO:0005524|GO:0016887
Pste6g03864 1224 PANTHER ABC TRANSPORTER B FAMILY 898 1217 IPR039421 -
Pste6g03864 1224 Gene3D ABC transporter type 1, transmembrane domain 600 896 IPR036640 GO:0005524|GO:0016020
Pste6g03864 1224 FunFam ABC transporter B family member 9 947 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03864 Pste-Chr6 27850527 27859029 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03864 653 1221 Calmodulin-binding Proteins AT2G36910 37.316 9.67e-122 406