Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste6g03863 | atgtcagaggatatgtacatgaatggagactctgacaccagggaagattcaaagagcaaggccaaagatgaatctgccaaaacagtacccttatacaagcttttttcatttgctgatcctttggatcatctattgatgttcgttgggactgtgggtgcttttgggaatggagtctccacgcccttaacaattctgatgtttggaaatatgaccaaggcattcggaggaaccaaaaactccaacgaagttgttgacgaagtgtctctcaaatttatatacttggctgtgggtacctcttttgcatcacttttgcagttcacaggctggatgatcaatggggagagacaagctgcaagaattagaggcttataccttcaaacaattttgaggcaagatgttaccttctttgataaggaaactaaaactggagaggttgttggaaggatgtcaggtgatactgttcttattcaagacgccatgggtctgaaggtggggcagttcatacagttcataacaactttcatgggaggttttgttgtagcatttatcaagggatggcttctaactgttgtcatgctatcttgtattccacctcttgttttgtgtggagctatgataagcctaattattgcaaaagcatcatccaagggacaagaagcgtattctgtagcagcaactgtagtagagcagacaataggctctattagaacagttgcatctttcaccggggagaagcaagcaatggatatgtataatcagtccctaataaaagcttacaaggctggagtgcaagaggaactagcttctggttttgggtttggttctctctattttgttgttacctgcagttatggtttggccatatggtttggtgcaaaaatgataatagaaaaaggatatacaggtggagatgtggtgacagtaatgatttctgtattgacttgctccgtgtctcttggtcagacatctccaagcttgagtgcttttgctgctggtcaagctgcagcctttaagatgtttgaaacaattaaaaggaaaccagaaattgatgcttacgacaccactggtcacaagcttgatgacattcatggcgatatagagcttagggaggtttgctttagttatcctacaagacctgatgaattgatattcaatggtttttctctttcaatatctaggggcactacgacagctttggtaggagaaagtgggagtgggaaatccactgttgatggtgcaactgttgaagaaatcagagccgcagcagaactagctaattctgccatatttatagataaacttcctcagggactagacacgatggttggtgagcatggaactcagctctctggcggtcaaaagcaaagagttgcaatagcaagagcaattttgaaagatccaagaatcctacttctggatgaagctacaagttcccttgacgctgaatctgaaaaaattgtacaggaggcattggacagaataatgatagaccgaacaactgtcattgtagcccaccgcttaagcactataaggaatgctgatagtatagctgttattcatcaaggaaagatagttgaaagaggttcacatggtgagctcaccaaggatcctaatggagcctacagccaactcattagactacaagaaattaaaggatcaagtcaaaatgctgcaaatgaaatagacacggttgaaagtatagtgcattctgaaagacaattaagtcaaagatctctcttacaatctataagccaacgttcatcaggagttggaagcagtggtcataattcattctcagaatcgcatgctgtgttgacaacagttggcttggaacctgaagatggaggacctcaagctcctccttcaacagtttcttcaccaccgggagtgccactctatcgcttggcatatttaaacaagcctgagattccagtcttactgttagggactatagctgcagtaggaagtggactattgttgcccatttatgcgctctttgtttccaaaatgataagtattttctatgagccatttgatgaacttcgtaaagattcaaaactttgggcattactatttgctgcacttggtgtgatatcatttatcatgcctctgtgtagattctacctttttggtattgctggtggtaagttgataaaaaggattaggagaatgtgttttgagaaagtagttcacatggaagttagctggtttgataaagctgaacattcaagtggagcaattggagcaaggctttcttctgatgcagctgctgttcgagctttggttggggatgcacttggtttgctggttcaaaatattgctgcagcagtaggcggcttggtaattgcttttgaagcaagctggcagcttgctcttatagttcttgctttggctcccctaatagcgctaaatggatatgtgcaattcaaggtcctgaaaggattcagcgcaaatgcaaagaaactgtatgaggaagcaagtcaagtggcgaatgatgctgtaggaagtataagaacagttgcatctttctgtgctgaaaagaaggtgatggaattataccgggaaaaatgtgaaggaccaattaagacaggggtatggcgagggatcataagtggaattagttatggggtatcgtcctttgtgctatatgcagtttatgctagcagtttttatgcaggggctcgactggtagaggatggaaaatcaacgttctcagatgttttccgtgtcctttttgcactcagcatggcagctacgggaatctctcaatctggttctttggtccctgattcagctaactcaaaaagtgccgctgcttctgtatttgctattcttgaccgaaagtcacaaattgaccctagtgatgaatctggattgacattggaagaaatcgagggagagattgaatttaaccatgttagtttcaagtatcctaccagacctggtgttcaaatattcagcgatctttgcttaaccattcaaagtggcaagacagtagcattggttggagaaagcggaagtggaaaatcaacagtgatttcattattacaaagattttatgatccagactcaggtcacattacattggatggaaaagaaattcaaaggatgaaagttaaatggctacgacaacagatgagcctggtgagccaagagcccatagtgtttaatgacaccatccgggccaatattgcatatggaaagggaggagatgcaacagaagcagaaattattgctgcagcagaactggcaaatgctcacaacttcacaagttgtttgcaggagggttatgacacaatagtaggggagagagggattcaactatcagggggacagaagcagcgggtggcaattgcacgagctatagtgaagaatccaaaaatattacttctagatgaagccacaagtgcacttgatgccgagtctgaaaaagtcgttcaggatgcgttagaccttgttatggtggaccggaccacaatagtagtggcgcataggttatccactattaagggtgcagatttaattgcagtagttaaaaacggggtgatagtagagaagggaaaccatgaagcattactcaacaagggaggtgactatgcttccttagtagcattgcacacaactacttctacatcttag | 3639 | 0.0 | MSEDMYMNGDSDTREDSKSKAKDESAKTVPLYKLFSFADPLDHLLMFVGTVGAFGNGVSTPLTILMFGNMTKAFGGTKNSNEVVDEVSLKFIYLAVGTSFASLLQFTGWMINGERQAARIRGLYLQTILRQDVTFFDKETKTGEVVGRMSGDTVLIQDAMGLKVGQFIQFITTFMGGFVVAFIKGWLLTVVMLSCIPPLVLCGAMISLIIAKASSKGQEAYSVAATVVEQTIGSIRTVASFTGEKQAMDMYNQSLIKAYKAGVQEELASGFGFGSLYFVVTCSYGLAIWFGAKMIIEKGYTGGDVVTVMISVLTCSVSLGQTSPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGHKLDDIHGDIELREVCFSYPTRPDELIFNGFSLSISRGTTTALVGESGSGKSTVDGATVEEIRAAAELANSAIFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSSLDAESEKIVQEALDRIMIDRTTVIVAHRLSTIRNADSIAVIHQGKIVERGSHGELTKDPNGAYSQLIRLQEIKGSSQNAANEIDTVESIVHSERQLSQRSLLQSISQRSSGVGSSGHNSFSESHAVLTTVGLEPEDGGPQAPPSTVSSPPGVPLYRLAYLNKPEIPVLLLGTIAAVGSGLLLPIYALFVSKMISIFYEPFDELRKDSKLWALLFAALGVISFIMPLCRFYLFGIAGGKLIKRIRRMCFEKVVHMEVSWFDKAEHSSGAIGARLSSDAAAVRALVGDALGLLVQNIAAAVGGLVIAFEASWQLALIVLALAPLIALNGYVQFKVLKGFSANAKKLYEEASQVANDAVGSIRTVASFCAEKKVMELYREKCEGPIKTGVWRGIISGISYGVSSFVLYAVYASSFYAGARLVEDGKSTFSDVFRVLFALSMAATGISQSGSLVPDSANSKSAAASVFAILDRKSQIDPSDESGLTLEEIEGEIEFNHVSFKYPTRPGVQIFSDLCLTIQSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIQRMKVKWLRQQMSLVSQEPIVFNDTIRANIAYGKGGDATEAEIIAAAELANAHNFTSCLQEGYDTIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDLVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIVEKGNHEALLNKGGDYASLVALHTTTSTS | 1212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste6g03863 | 1212 | SUPERFAMILY | ABC transporter transmembrane region | 33 | 350 | IPR036640 | GO:0005524|GO:0016020 | |
| Pste6g03863 | 1212 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 366 | 546 | IPR003439 | GO:0005524 | |
| Pste6g03863 | 1212 | ProSitePatterns | ABC transporters family signature. | 1108 | 1122 | IPR017871 | GO:0005524|GO:0016887 | |
| Pste6g03863 | 1212 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 46 | 327 | - | - | |
| Pste6g03863 | 1212 | SUPERFAMILY | ABC transporter transmembrane region | 634 | 952 | IPR036640 | GO:0005524|GO:0016020 | |
| Pste6g03863 | 1212 | Gene3D | ABC transporter type 1, transmembrane domain | 935 | 1208 | IPR036640 | GO:0005524|GO:0016020 | |
| Pste6g03863 | 1212 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 958 | 1205 | IPR027417 | - | |
| Pste6g03863 | 1212 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 358 | 548 | IPR027417 | - | |
| Pste6g03863 | 1212 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 968 | 1205 | IPR003439 | GO:0005524 | |
| Pste6g03863 | 1212 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - | |
| Pste6g03863 | 1212 | FunFam | ABC transporter B family member 1 | 958 | 1207 | - | - | |
| Pste6g03863 | 1212 | Pfam | ABC transporter | 436 | 477 | IPR003439 | GO:0005524 | |
| Pste6g03863 | 1212 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Pste6g03863 | 1212 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 647 | 933 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Pste6g03863 | 1212 | PANTHER | ABC TRANSPORTER B FAMILY | 635 | 1205 | IPR039421 | - | |
| Pste6g03863 | 1212 | ProSitePatterns | ABC transporters family signature. | 449 | 463 | IPR017871 | GO:0005524|GO:0016887 | |
| Pste6g03863 | 1212 | Pfam | ABC transporter | 988 | 1136 | IPR003439 | GO:0005524 | |
| Pste6g03863 | 1212 | SMART | AAA_5 | 393 | 523 | IPR003593 | GO:0016887 | |
| Pste6g03863 | 1212 | SMART | AAA_5 | 995 | 1188 | IPR003593 | GO:0016887 | |
| Pste6g03863 | 1212 | Gene3D | - | 413 | 549 | IPR027417 | - | |
| Pste6g03863 | 1212 | Gene3D | - | 356 | 410 | IPR027417 | - | |
| Pste6g03863 | 1212 | Gene3D | - | 958 | 1207 | IPR027417 | - | |
| Pste6g03863 | 1212 | FunFam | ABC transporter B family member 1 | 626 | 934 | - | - | |
| Pste6g03863 | 1212 | FunFam | ABC transporter B family member 9 | 935 | 957 | - | - | |
| Pste6g03863 | 1212 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 636 | 951 | - | - | |
| Pste6g03863 | 1212 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 47 | 331 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Pste6g03863 | 1212 | FunFam | ABC transporter B family member 9 | 33 | 362 | - | - | |
| Pste6g03863 | 1212 | Gene3D | ABC transporter type 1, transmembrane domain | 632 | 934 | IPR036640 | GO:0005524|GO:0016020 | |
| Pste6g03863 | 1212 | Gene3D | ABC transporter type 1, transmembrane domain | 550 | 563 | IPR036640 | GO:0005524|GO:0016020 | |
| Pste6g03863 | 1212 | Gene3D | ABC transporter type 1, transmembrane domain | 33 | 355 | IPR036640 | GO:0005524|GO:0016020 | |
| Pste6g03863 | 1212 | Pfam | ABC transporter transmembrane region | 46 | 316 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Pste6g03863 | 1212 | Pfam | ABC transporter transmembrane region | 646 | 916 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Pste6g03863 | 1212 | CDD | ABC_MTABC3_MDL1_MDL2 | 968 | 1203 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pste6g03863 | Pste-Chr6 | 27825069 | 27834339 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste6g03863 | 20 | 1211 | Calmodulin-binding Proteins | AT2G36910 | 41.442 | 0.0 | 915 |