Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g03855 atggaagtggaggactgggatttgagcgcagaggacctcgattctctcgaaagagacgctttccagaagattgctcaactacgcaacccttcttctccgcatcaacgccaccattctgcaaccgcaacaaccagtcacttcccaccacaaccacttcccgattctcgtccccaaactgttggtgctccgtctcaaggagaaggagcaggagcaggagcaagagcattgcccacgtcattgaaatcagggacaaataacgtcaaacatttgaaagagctaccaaaatttccggtcaaattttttcttcattccagcggaaatattgctgctaaatttcaatatgatcaggtagtcatttctgcttttcgaaaaatcagtagatcttcttggaatgcaaaagaacggttatggatatttccgccatcttccttgttagaagcagaaaaggttcttggagaaatacctggttataatgttcaggtggaaaacttagatcccttagtgcaacgtgccattgctgcggcgtcagcagttccagatcttcaagatcggtatgacaagatccctagttacattgaattaaagctattgccatttcagagagaaggtgtaaggtttatattgcagcatggaggacgcgtgctcttagcagatgaaatgggacttgggaaaactttgcaggcaattgcagtagcttcatgtgttcaggactcgtggccagttctcataattgcaccatcttcgttacgcttacaatgggcaactatgattcaacaatggctgaatattccttcatcagatatacttattgtcttaggtcaaagtggtggatcaaatagaggaggtttcaatatagtatcttcaagtgccaaaagcagcattcgtctggatggactattcaacattatctcatacgatttggtgcctaagctacagaatatgcttatgacatgtgactttaaggttgtgattgctgatgaatcacattatctgaaaaatgctcaggcaaaaaggacaactgcttctcttcctgtcataaagaaagctcaatatgcattattgcttagtggaacacctgctttatcacgaccaattgagttattcaagcagctggaagccttgtatcctgatgtatataggaatgttcatgaatatggtaaccggtactgcaagggtggattctttggaatatatcaaggtgcaagtaaccatgaagagttgcacaacttgatgaaggcaacggtgttgattcgcaggcttaaaaatgaagttctttctgagcttcctgtaaagcgcaggcaacaagtcttcctagacttggctgacaaggacatgaagcaaattaatgctttatttcgagagttggagatggtaaaagcaaaaattaaggcagctaaatcacaggaggaggctggatcactcaagtttactcaaaagaatcttattaataagatatatactgattctgcagaagccaagattccatctgttcttgattatgttggaactgtcattgaggcaggttgcaagtttcttatatttgcacaccatcagccaatgattgacgcaatacatgagtttcttcttaagaaaaaattgggttgcatccggattgatggaggtacacctgctgcatccaggcaacaattggttacggagtttcaggaaaaagattctatcaagggagcagtgctatcaattaaagctggaggtgttggattaactttaactgctgccagcacagtaatctttgcagaattgtcttggactcctggtgaccttattcaggctgaagaccgtgcccatagaattggccaggtatcttcagtaaatatatactacttgctagcaaatgacactgttgatgacatcatatgggacgtagtgcaaagcaaattggaaaatttggggcagatgttagacggccatgagaacgccttagaggtctcagccagtatgccgttgaatagcccttcaaaacagaaaactcttgaccagtttgtcagaagatctgataacatgaatgggttggtgaacagcccttcgaagcagaaaactctagaccagtttgttagaagatgtgataacgtggataggtgcttaaggtggagaagaatatatgttggcactgagaagaggggcttctaa 2148 0.0 MEVEDWDLSAEDLDSLERDAFQKIAQLRNPSSPHQRHHSATATTSHFPPQPLPDSRPQTVGAPSQGEGAGAGARALPTSLKSGTNNVKHLKELPKFPVKFFLHSSGNIAAKFQYDQVVISAFRKISRSSWNAKERLWIFPPSSLLEAEKVLGEIPGYNVQVENLDPLVQRAIAAASAVPDLQDRYDKIPSYIELKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCVQDSWPVLIIAPSSLRLQWATMIQQWLNIPSSDILIVLGQSGGSNRGGFNIVSSSAKSSIRLDGLFNIISYDLVPKLQNMLMTCDFKVVIADESHYLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGFFGIYQGASNHEELHNLMKATVLIRRLKNEVLSELPVKRRQQVFLDLADKDMKQINALFRELEMVKAKIKAAKSQEEAGSLKFTQKNLINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDAIHEFLLKKKLGCIRIDGGTPAASRQQLVTEFQEKDSIKGAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENALEVSASMPLNSPSKQKTLDQFVRRSDNMNGLVNSPSKQKTLDQFVRRCDNVDRCLRWRRIYVGTEKRGF 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g03855 715 SMART ultradead3 192 385 IPR014001 -
Pste6g03855 715 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 696 - -
Pste6g03855 715 Gene3D - 460 696 IPR027417 -
Pste6g03855 715 CDD SF2_C_SNF 492 616 - -
Pste6g03855 715 ProSiteProfiles HARP domain profile. 89 166 IPR010003 -
Pste6g03855 715 Pfam Helicase conserved C-terminal domain 506 605 IPR001650 -
Pste6g03855 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 420 IPR027417 -
Pste6g03855 715 CDD DEXHc_HARP_SMARCAL1 196 419 - -
Pste6g03855 715 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 377 IPR014001 -
Pste6g03855 715 Gene3D - 170 425 IPR038718 -
Pste6g03855 715 FunFam Chromatin remodeling factor18 169 443 - -
Pste6g03855 715 SMART helicmild6 522 605 IPR001650 -
Pste6g03855 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 648 IPR027417 -
Pste6g03855 715 Coils Coil 448 468 - -
Pste6g03855 715 MobiDBLite consensus disorder prediction 21 82 - -
Pste6g03855 715 MobiDBLite consensus disorder prediction 25 49 - -
Pste6g03855 715 Pfam SNF2-related domain 214 468 IPR000330 GO:0005524|GO:0140658
Pste6g03855 715 FunFam Chromatin remodeling factor18 454 678 - -
Pste6g03855 715 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 648 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g03855 Pste-Chr6 27759314 27771121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g03855 502 646 RAD5 or RAD16-like Gene Family AT1G11100 33.103 4.61e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste6g03855 SNF2_N 2.2e-26 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03855 6 27759314 27771121 Pste6g03855 6 27759314 27771121 ECH
Pste6g03855 6 27759314 27771121 Pste3g04144 3 36980909 36982109 PCT